INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH937458	Streptococcus phage CHPC572	37005	38.511	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Moineauvirus	Moineauvirus CHPC572	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_27;cro orf_28
MH937459	Streptococcus phage CHPC595	35697	39.071	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	97.220	AAI-based (high-confidence)	Moineauvirus	Moineauvirus CHPC595	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH937460	Streptococcus phage CHPC640	40404	38.768	Streptococcus	Group I	Brussowvirus	Brussowvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Brussowvirus	Brussowvirus CHPC640	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_37
MH937461	Streptococcus phage CHPC642	35715	38.776	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	96.200	AAI-based (high-confidence)	Moineauvirus	Moineauvirus CHPC642	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_29;cro orf_30
MH937462	Streptococcus phage CHPC663	38531	38.930	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Moineauvirus	Moineauvirus CHPC663	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_32
MH937463	Streptococcus phage CHPC676	40402	38.758	Streptococcus	Group I	Brussowvirus	Brussowvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Brussowvirus	Brussowvirus CHPC640	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_36
MH937464	Streptococcus phage CHPC869	37080	39.064	Streptococcus	Group I	Brussowvirus	Brussowvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	97.120	AAI-based (high-confidence)	Brussowvirus	Brussowvirus CHPC869	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_32
MH937465	Streptococcus phage CHPC873	38258	38.084	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	Complete	High-quality	100.000	DTR (high-confidence)	Moineauvirus	Moineauvirus CHPC873	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH937466	Streptococcus phage CHPC875	36576	39.020	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	Complete	High-quality	100.000	DTR (high-confidence)	Moineauvirus	Moineauvirus CHPC875	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_29
MH937467	Streptococcus phage CHPC877	39965	38.364	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Moineauvirus	Moineauvirus CHPC877	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_32