INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH917278 | Shigella phage phi2457T | 50219 | 45.288 | Shigella | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri serotype 2a strain 2457T | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tunavirus | Tunavirus Sfin1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH920362 | Citrobacter phage Maleficent | 89570 | 38.875 | Citrobacter | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus mordin | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH920638 | Synechococcus phage S-B05 | 40500 | 38.259 | Synechococcus | Group I | Kyanoviridae | Unclassified | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. MW02 | Low-quality | Genome-fragment | 18.010 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH920639 | Synechococcus phage S-P4 | 158485 | 39.946 | Synechococcus | Group I | Leucotheavirus | Leucotheavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 90.480 | AAI-based (high-confidence) | Leucotheavirus | Leucotheavirus sp4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH920640 | Synechococcus phage S-E7 | 177622 | 39.894 | Synechococcus | Group I | Leucotheavirus | Leucotheavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | Complete | High-quality | 100.000 | DTR (high-confidence) | Leucotheavirus | Leucotheavirus syn30 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH925090 | Vibrio phage ValLY_3 | 76310 | 48.780 | Vibrio | Group I | Mardecavirus | Mardecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus | Complete | High-quality | 100.000 | DTR (high-confidence) | Mardecavirus | Mardecavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH925091 | Vibrio phage ValSw4_1 | 79545 | 45.681 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH925092 | Vibrio phage VpaJT_1 | 60177 | 49.246 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH925093 | Vibrio phage VspDsh_1 | 46692 | 46.715 | Vibrio | Group I | Queuovirinae | Unclassified | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. | Low-quality | Genome-fragment | 44.960 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH925094 | Vibrio phage VspSw_1 | 113760 | 43.836 | Vibrio | Group I | Pogseptimavirus | Pogseptimavirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Pogseptimavirus | Pogseptimavirus VspSw1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |