INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH892383 | Streptococcus phage SW31 | 36587 | 39.238 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 95.790 | AAI-based (high-confidence) | Brussowvirus | Brussowvirus SW13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_29 |
| MH892384 | Streptococcus phage SW32 | 36587 | 39.238 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 95.790 | AAI-based (high-confidence) | Brussowvirus | Brussowvirus SW13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_29 |
| MH892385 | Streptococcus phage SW33 | 36587 | 39.238 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 95.790 | AAI-based (high-confidence) | Brussowvirus | Brussowvirus SW13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_29 |
| MH898687 | Edwardsiella phage Edno5 | 40844 | 50.803 | Edwardsiella | Group I | Gofduovirus | Gofduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella anguillarum EA011113 | High-quality | High-quality | 97.690 | AAI-based (high-confidence) | Gofduovirus | Gofduovirus edno5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_33;antirepressor orf_50 |
| MH899585 | Klebsiella phage Pylas | 70408 | 41.213 | Klebsiella | Group I | Pylasvirus | Pylasvirus | Humphriesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | Pylasvirus | Pylasvirus pylas | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH910038 | Mycobacterium phage LeMond | 62515 | 68.766 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Anayavirus | Anayavirus kisi | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;immunity orf_46 |
| MH910039 | Mycobacterium phage Oscar | 62437 | 68.764 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Anayavirus | Anayavirus kisi | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;immunity orf_46 |
| MH910040 | Mycobacterium phage Sauce | 156554 | 64.721 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.130 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus sauce | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH910041 | Arthrobacter phage Seahorse | 56481 | 62.697 | Arthrobacter | Group I | Seamegvirus | Seamegvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Seamegvirus | Seamegvirus seahorse | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36;integrase orf_40 |
| MH910042 | Mycobacterium phage Scarlett | 62306 | 68.745 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Anayavirus | Anayavirus kisi | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;immunity orf_46 |