INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH892373	Streptococcus phage SW27	33953	38.250	Streptococcus	Group I	Vansinderenvirus	Vansinderenvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	92.620	AAI-based (high-confidence)	Vansinderenvirus	Vansinderenvirus SW27	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_27;cro orf_28
MH892374	Streptococcus phage SW28	32093	36.880	Streptococcus	Group I	Piorkowskivirus	Piorkowskivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	98.520	AAI-based (high-confidence)	Piorkowskivirus	Piorkowskivirus SW16	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_27
MH892375	Streptococcus phage SW30	34158	38.460	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	92.370	AAI-based (high-confidence)	Moineauvirus	Moineauvirus SW6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_27
MH892376	Streptococcus phage SW1151	35056	39.599	Streptococcus	Group I	Brussowvirus	Brussowvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	91.720	AAI-based (high-confidence)	Brussowvirus	Brussowvirus SW1151	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_30
MH892377	Streptococcus phage SWK1	36089	39.167	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	97.910	AAI-based (high-confidence)	Moineauvirus	Moineauvirus SW7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH892378	Streptococcus phage SWK2	36594	39.296	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	99.290	AAI-based (high-confidence)	Moineauvirus	Moineauvirus SW7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH892379	Streptococcus phage SWK3	35443	38.716	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	95.730	AAI-based (high-confidence)	Moineauvirus	Moineauvirus SWK3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_27
MH892380	Streptococcus phage SWK4	35341	38.694	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	95.450	AAI-based (high-confidence)	Moineauvirus	Moineauvirus SWK3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_27
MH892381	Streptococcus phage SWK5	35849	38.899	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	96.640	AAI-based (high-confidence)	Moineauvirus	Moineauvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH892382	Streptococcus phage SWK6	34999	39.007	Streptococcus	Group I	Moineauvirus	Moineauvirus	Unclassified	Aliceevansviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus thermophilus	High-quality	High-quality	94.330	AAI-based (high-confidence)	Moineauvirus	Moineauvirus SWK6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic