INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH834600 | Mycobacterium phage BigCheese | 72810 | 58.905 | Mycobacterium | Group I | Faithunavirus | Faithunavirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.190 | AAI-based (high-confidence) | Faithunavirus | Faithunavirus faith1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_39;immunity orf_41;cro orf_42 |
| MH834601 | Mycobacterium phage BoostSeason | 58078 | 68.213 | Mycobacterium | Group I | Timquatrovirus | Timquatrovirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Timquatrovirus | Timquatrovirus mufasa | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_44;immunity orf_46;cro orf_47 |
| MH834602 | Microbacterium phage Brahms | 39828 | 67.068 | Microbacterium | Group I | Armstrongvirus | Armstrongvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 96.740 | AAI-based (high-confidence) | Armstrongvirus | Armstrongvirus armstrong | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH834603 | Arthrobacter phage Bridgette | 43113 | 65.089 | Arthrobacter | Group I | Bridgettevirus | Bridgettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | Bridgettevirus | Bridgettevirus bridgette | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34;integrase orf_37 |
| MH834604 | Microbacterium phage Coltrane | 39828 | 67.071 | Microbacterium | Group I | Armstrongvirus | Armstrongvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 96.740 | AAI-based (high-confidence) | Armstrongvirus | Armstrongvirus armstrong | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH834605 | Arthrobacter phage Constance | 43706 | 65.128 | Arthrobacter | Group I | Bridgettevirus | Bridgettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bridgettevirus | Bridgettevirus constance | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34;integrase orf_37 |
| MH834606 | Arthrobacter phage Coral | 38317 | 66.660 | Arthrobacter | Group I | Coralvirus | Coralvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 98.550 | AAI-based (high-confidence) | Coralvirus | Coralvirus coral | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36 |
| MH834608 | Arthrobacter phage Cote | 39044 | 66.722 | Arthrobacter | Group I | Coralvirus | Coralvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Coralvirus | Coralvirus coral | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38 |
| MH834609 | Arthrobacter phage Daob | 37967 | 66.595 | Arthrobacter | Group I | Coralvirus | Coralvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 97.650 | AAI-based (high-confidence) | Coralvirus | Coralvirus coral | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38 |
| MH834610 | Arthrobacter phage DrManhattan | 42577 | 65.953 | Arthrobacter | Group I | Manhattanvirus | Manhattanvirus | Unclassified | Casidaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter atrocyaneus NRRL B-2883 | High-quality | High-quality | 98.360 | AAI-based (high-confidence) | Manhattanvirus | Manhattanvirus drmanhattan | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_52 |