INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH825711	Arthrobacter phage Tenno	58193	49.626	Arthrobacter	Group I	Gordonvirus	Gordonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gordonvirus	Gordonvirus captnmurica	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_9
MH825712	Microbacterium phage ValentiniPuff	62517	67.148	Microbacterium	Group I	Valentinivirus	Valentinivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium paraoxydans NRRL B-14843	High-quality	High-quality	100.000	AAI-based (high-confidence)	Valentinivirus	Valentinivirus valentinipuff	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH825713	Mycobacterium phage Zalkecks	154764	64.739	Mycobacterium	Group I	Bixzunavirus	Bixzunavirus	Ceeclamvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.010	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus quasimodo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH830339	Proteus phage Stubb	104410	38.512	Proteus	Group I	Novosibvirus	Novosibvirus	Unclassified	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Proteus mirabilis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Novosibvirus	Novosibvirus stubb	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH834594	Arthrobacter phage Adaia	15840	56.111	Arthrobacter	Group I	Adaiavirus	Adaiavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sulfureus NRRL B-14730 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Adaiavirus	Adaiavirus adaia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH834595	Arthrobacter phage Andrew	38802	65.533	Arthrobacter	Group I	Andrewvirus	Andrewvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis NRRL B-2979 SEA	High-quality	High-quality	99.860	AAI-based (high-confidence)	Andrewvirus	Andrewvirus andrew	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36
MH834596	Microbacterium phage Armstrong	39928	67.138	Microbacterium	Group I	Armstrongvirus	Armstrongvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	97.100	AAI-based (high-confidence)	Armstrongvirus	Armstrongvirus armstrong	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH834597	Arthrobacter phage Atraxa	14927	58.036	Arthrobacter	Group I	Atraxavirus	Atraxavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sulfureus NRRL B-14730 SEA	High-quality	High-quality	98.000	AAI-based (high-confidence)	Atraxavirus	Atraxavirus atraxa	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH834598	Arthrobacter phage Auxilium	49447	62.584	Arthrobacter	Group I	Richievirus	Richievirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis NRRL B-2979 SEA	High-quality	High-quality	94.060	AAI-based (high-confidence)	Richievirus	Richievirus auxilium	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_33;integrase orf_37
MH834599	Microbacterium phage Bernstein	39926	67.134	Microbacterium	Group I	Armstrongvirus	Armstrongvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	96.980	AAI-based (high-confidence)	Armstrongvirus	Armstrongvirus armstrong	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic