INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH834611 | Arthrobacter phage Eileen | 41165 | 65.126 | Arthrobacter | Group I | Bridgettevirus | Bridgettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 95.730 | AAI-based (high-confidence) | Bridgettevirus | Bridgettevirus eileen | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_33 |
| MH834614 | Arthrobacter phage Judy | 43440 | 65.168 | Arthrobacter | Group I | Bridgettevirus | Bridgettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bridgettevirus | Bridgettevirus judy | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_35;integrase orf_39 |
| MH834616 | Arthrobacter phage Kepler | 38449 | 66.735 | Arthrobacter | Group I | Coralvirus | Coralvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 99.120 | AAI-based (high-confidence) | Coralvirus | Coralvirus kepler | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38 |
| MH834617 | Mycobacterium phage Lizziana | 58423 | 61.335 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus lizziana | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_46;immunity orf_48 |
| MH834618 | Arthrobacter phage Lunar | 38450 | 66.687 | Arthrobacter | Group I | Coralvirus | Coralvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 99.130 | AAI-based (high-confidence) | Coralvirus | Coralvirus coral | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38 |
| MH834619 | Arthrobacter phage Maureen | 45802 | 68.816 | Arthrobacter | Group I | Liebevirus | Liebevirus | Unclassified | Casidaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Liebevirus | Liebevirus liebe | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH834620 | Arthrobacter phage Melons | 38457 | 66.784 | Arthrobacter | Group I | Coralvirus | Coralvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 99.150 | AAI-based (high-confidence) | Coralvirus | Coralvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38 |
| MH834623 | Arthrobacter phage Peas | 44103 | 64.712 | Arthrobacter | Group I | Bridgettevirus | Bridgettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bridgettevirus | Bridgettevirus peas | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_35 |
| MH834624 | Arthrobacter phage Polka | 38077 | 66.699 | Arthrobacter | Group I | Coralvirus | Coralvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 97.930 | AAI-based (high-confidence) | Coralvirus | Coralvirus coral | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36 |
| MH834625 | Arthrobacter phage Richie | 53867 | 62.706 | Arthrobacter | Group I | Richievirus | Richievirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Richievirus | Richievirus richie | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36;integrase orf_40 |