INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH791414 | Aeromonas phage Aswh_1 | 229730 | 38.370 | Aeromonas | Group I | Ishigurovirus | Ishigurovirus | Emmerichvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 97.620 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH791415 | Enterococcus phage EfsWh-1 | 58036 | 39.849 | Enterococcus | Group I | Saphexavirus | Saphexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH791416 | Pseudomonas phage PaSzW-1 | 94315 | 49.364 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus PaZq1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_137 |
| MH800198 | Acinetobacter phage vB_AbaM_B09_Aci01-1 | 103628 | 37.186 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | Complete | High-quality | 100.000 | DTR (high-confidence) | Saclayvirus | Saclayvirus Aci011 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH800199 | Acinetobacter phage vB_AbaM_B09_Aci02-2 | 104354 | 37.182 | Acinetobacter | Group I | Saclayvirus | Saclayvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | Complete | High-quality | 100.000 | DTR (high-confidence) | Saclayvirus | Saclayvirus Aci022 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH800200 | Acinetobacter phage vB_AbaP_46-62_Aci07 | 42330 | 39.135 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | Complete | High-quality | 100.000 | DTR (high-confidence) | Friunavirus | Friunavirus Aci07 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH807810 | Dickeya phage Dagda_B1 | 40484 | 48.113 | Dickeya | Group I | Aarhusvirus | Aarhusvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani DSM28711 | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Aarhusvirus | Aarhusvirus dagda | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH807811 | Pectobacterium phage Gaspode | 44364 | 48.808 | Pectobacterium | Group I | Phimunavirus | Phimunavirus | Corkvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum DSM18077 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phimunavirus | Phimunavirus gaspode | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH807812 | Dickeya phage Kamild | 152612 | 49.168 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani DSM28711 | High-quality | High-quality | 96.640 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus limestone | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH807813 | Dickeya phage Katbat | 40441 | 48.038 | Dickeya | Group I | Aarhusvirus | Aarhusvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani DSM28711 | High-quality | High-quality | 99.650 | AAI-based (high-confidence) | Aarhusvirus | Aarhusvirus katbat | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |