INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH791404 | Aeromonas phage Assk | 231839 | 37.288 | Aeromonas | Group I | Ceceduovirus | Ceceduovirus | Emmerichvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 97.790 | AAI-based (high-confidence) | Ceceduovirus | Ceceduovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH791405 | Salmonella phage SeSz-1 | 155297 | 44.768 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 98.250 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus SeSz1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH791406 | Pseudomonas phage PaSz-4 | 61942 | 64.438 | Pseudomonas | Group I | Yuavirus | Yuavirus | Rabinowitzvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Yuavirus | Yuavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH791407 | Aeromonas phage AsFcp_4 | 220450 | 41.919 | Aeromonas | Group I | Angelvirus | Angelvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 97.880 | AAI-based (high-confidence) | Angelvirus | Angelvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH791408 | Pseudomonas phage PaZq-1 | 94315 | 49.364 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus PaZq1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_88 |
| MH791409 | Escherichia phage EcWhh-1 | 170524 | 39.442 | Escherichia | Group I | Dhakavirus | Dhakavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dhakavirus | Dhakavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH791410 | Salmonella phage Seszw_1 | 45881 | 45.938 | Salmonella | Group I | Skatevirus | Skatevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 97.860 | AAI-based (high-confidence) | Skatevirus | Skatevirus Seszw1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH791411 | Escherichia phage Ecwhy_1 | 354537 | 35.571 | Escherichia | Group I | Asteriusvirus | Asteriusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 93.900 | AAI-based (high-confidence) | Asteriusvirus | Asteriusvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH791412 | Salmonella phage SeSz-2 | 45049 | 45.972 | Salmonella | Group I | Skatevirus | Skatevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 96.070 | AAI-based (high-confidence) | Skatevirus | Skatevirus SeSz2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH791413 | Escherichia phage EcSzw_1 | 86813 | 39.970 | Escherichia | Group I | Suspvirus | Suspvirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.570 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |