INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH424444	Salmonella virus VSiP	43110	51.211	Salmonella	Group I	Cornellvirus	Cornellvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Infantis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cornellvirus	Cornellvirus VSiP	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH424445	Salmonella virus VSt10	41581	50.032	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	97.030	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus VSt10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH424446	Salmonella virus VSt472	46905	45.643	Salmonella	Group I	Skatevirus	Skatevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	99.870	AAI-based (high-confidence)	Skatevirus	Skatevirus VSt472	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MH426724	Erwinia phage Wellington	244950	52.115	Erwinia	Group I	Wellingtonvirus	Wellingtonvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora	High-quality	High-quality	98.530	AAI-based (high-confidence)	Wellingtonvirus	Wellingtonvirus wellington	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH426725	Erwinia phage SunLIRen	84559	43.753	Erwinia	Group I	Kolesnikvirus	Kolesnikvirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora	High-quality	High-quality	99.660	AAI-based (high-confidence)	Kolesnikvirus	Kolesnikvirus Ea214	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH426726	Erwinia phage Pavtok	61401	61.983	Erwinia	Group I	Pavtokvirus	Pavtokvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pavtokvirus	Pavtokvirus pavtok	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32
MH427377	Escherichia phage vB_EcoM_Sa157lw	155887	44.944	Escherichia	Group I	Kuttervirus	Kuttervirus	Cvivirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	98.640	AAI-based (high-confidence)	Kuttervirus	Kuttervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH431930	Paenibacillus phage Wanderer	40448	42.353	Paenibacillus	Group I	Wanderervirus	Wanderervirus	Gochnauervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	99.430	AAI-based (high-confidence)	Wanderervirus	Wanderervirus wanderer	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_24;antirepressor orf_29
MH431931	Paenibacillus phage Yyerffej	43126	40.551	Paenibacillus	Group I	Fernvirus	Fernvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fernvirus	Fernvirus yyerffej	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_30;antirepressor orf_39
MH431932	Paenibacillus phage Arcticfreeze	38518	41.485	Paenibacillus	Group I	Fernvirus	Fernvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paenibacillus larvae	High-quality	High-quality	96.200	AAI-based (high-confidence)	Fernvirus	Fernvirus jacopo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;antirepressor orf_40