INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH399787 | Mycobacterium phage Rubeelu | 41491 | 65.822 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.180 | AAI-based (high-confidence) | Charlievirus | Charlievirus butters | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_37 |
| MH399788 | Mycobacterium phage Visconti | 64570 | 59.684 | Mycobacterium | Group I | Plotvirus | Plotvirus | Dclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.900 | AAI-based (high-confidence) | Plotvirus | Plotvirus plot | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH399789 | Arthrobacter phage Tatanka | 58120 | 49.981 | Arthrobacter | Group I | Gordonvirus | Gordonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gordonvirus | Gordonvirus tatanka | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH400309 | Escherichia phage Vec13 | 39747 | 50.170 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus Vec13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MH401414 | Staphylococcus phage SA45ruMSSAST97 | 43454 | 33.329 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus SA45 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus JS01 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_10;cro orf_15;cro orf_16;antirepressor orf_17;integrase orf_41 |
| MH401415 | Staphylococcus phage SA537ruMSSAST97 | 43458 | 33.349 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus Sa537 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus JS01 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_10;cro orf_15;cro orf_16;antirepressor orf_17;integrase orf_41 |
| MH401416 | Staphylococcus phage SA345ruMSSAST8 | 42735 | 33.062 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus Sa345 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus SA345ruMSSAST8 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;cro orf_8;antirepressor orf_12;integrase orf_33 |
| MH412654 | Synechococcus phage S-T4 | 181082 | 38.927 | Synechococcus | Group I | Tamkungvirus | Tamkungvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 94.840 | AAI-based (medium-confidence) | Tamkungvirus | Tamkungvirus ST4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH422554 | Punavirus P1 | 97213 | 47.915 | Unspecified | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 94.110 | AAI-based (high-confidence) | Punavirus | Punavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_39;parA orf_50;cro orf_104;cro orf_105 |
| MH424443 | Salmonella virus VSe103 | 42262 | 50.002 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 98.470 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus VSe103 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |