INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH431933 | Paenibacillus phage DevRi | 38520 | 41.493 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 96.200 | AAI-based (high-confidence) | Fernvirus | Fernvirus jacopo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;antirepressor orf_40 |
| MH431934 | Paenibacillus phage Gryphonian | 38541 | 41.457 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 96.270 | AAI-based (high-confidence) | Fernvirus | Fernvirus jacopo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;antirepressor orf_40 |
| MH431935 | Paenibacillus phage Honeybear | 40054 | 41.941 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | Fernvirus | Fernvirus pagassa | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;antirepressor orf_35;antirepressor orf_40 |
| MH431936 | Paenibacillus phage Kawika | 40769 | 41.782 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus kawika | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;antirepressor orf_33;antirepressor orf_38 |
| MH431937 | Paenibacillus phage Lucielle | 37947 | 41.821 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 94.690 | AAI-based (high-confidence) | Fernvirus | Fernvirus lucielle | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;antirepressor orf_33;antirepressor orf_37 |
| MH431938 | Paenibacillus phage C7Cdelta | 55774 | 48.008 | Paenibacillus | Group I | Halcyonevirus | Halcyonevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Halcyonevirus | Halcyonevirus C7Cdelta | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_22;antirepressor orf_29 |
| MH443100 | Erwinia phage vB_EhrS_49 | 46835 | 50.844 | Erwinia | Group I | Feofaniavirus | Feofaniavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia horticola | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Feofaniavirus | Feofaniavirus Eho49 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26 |
| MH443101 | Erwinia phage vB_EhrS_59 | 47116 | 50.405 | Erwinia | Group I | Feofaniavirus | Feofaniavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia horticola | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Feofaniavirus | Feofaniavirus Eho59 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;cro orf_53 |
| MH444512 | Bifidobacterium phage PMBT6 | 36607 | 61.644 | Bifidobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bifidobacterium thermophilum 94004 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;antirepressor orf_14;integrase orf_52 |
| MH445380 | Escherichia phage P1 | 126505 | 49.902 | Escherichia | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Medium-quality | Genome-fragment | 77.630 | AAI-based (high-confidence) | Punavirus | Punavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_13;parA orf_24;cro orf_82;cro orf_83;integrase orf_108 |