Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MH431933Paenibacillus phage DevRi3852041.493PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality96.200AAI-based (high-confidence) FernvirusFernvirus jacopoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;antirepressor orf_40
MH431934Paenibacillus phage Gryphonian3854141.457PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality96.270AAI-based (high-confidence) FernvirusFernvirus jacopoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;antirepressor orf_40
MH431935Paenibacillus phage Honeybear4005441.941PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality99.930AAI-based (high-confidence) FernvirusFernvirus pagassaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;antirepressor orf_35;antirepressor orf_40
MH431936Paenibacillus phage Kawika4076941.782PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) FernvirusFernvirus kawikaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;antirepressor orf_33;antirepressor orf_38
MH431937Paenibacillus phage Lucielle3794741.821PaenibacillusGroup I FernvirusFernvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality94.690AAI-based (high-confidence) FernvirusFernvirus lucielleCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;antirepressor orf_33;antirepressor orf_37
MH431938Paenibacillus phage C7Cdelta5577448.008PaenibacillusGroup I HalcyonevirusHalcyonevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Paenibacillus larvaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) HalcyonevirusHalcyonevirus C7CdeltaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_22;antirepressor orf_29
MH443100Erwinia phage vB_EhrS_494683550.844ErwiniaGroup I FeofaniavirusFeofaniavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia horticolaHigh-qualityHigh-quality100.000AAI-based (high-confidence) FeofaniavirusFeofaniavirus Eho49The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_26
MH443101Erwinia phage vB_EhrS_594711650.405ErwiniaGroup I FeofaniavirusFeofaniavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia horticolaHigh-qualityHigh-quality100.000AAI-based (high-confidence) FeofaniavirusFeofaniavirus Eho59The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_25;cro orf_53
MH444512Bifidobacterium phage PMBT63660761.644BifidobacteriumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bifidobacterium thermophilum 94004CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_1;antirepressor orf_14;integrase orf_52
MH445380Escherichia phage P112650549.902EscherichiaGroup I PunavirusPunavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliMedium-qualityGenome-fragment77.630AAI-based (high-confidence) PunavirusPunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_13;parA orf_24;cro orf_82;cro orf_83;integrase orf_108
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