INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MH051266	Mycobacterium phage MikeLiesIn	155916	64.708	Mycobacterium	Group I	Bixzunavirus	Bixzunavirus	Ceeclamvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.730	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus quasimodo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH051333	Escherichia phage vB_EcoM-Ro121c4YLVW	151671	39.099	Escherichia	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli STEC O121	Complete	High-quality	100.000	DTR (high-confidence)	Phapecoctavirus	Phapecoctavirus Ro121c4YLVW	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH051334	Escherichia phage vB_EcoS-Ro145c2YLVW	42145	50.566	Escherichia	Group I	Kagunavirus	Kagunavirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli STEC O145	High-quality	High-quality	98.080	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MH051335	Escherichia phage vB_EcoM-Ro157lw	72179	46.013	Escherichia	Group I	Wifcevirus	Wifcevirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli STEC O157	Complete	High-quality	100.000	DTR (high-confidence)	Wifcevirus	Wifcevirus Ro157lw	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH051911	Enterobacteria phage vB_EcoS_IME18	50354	45.615	Enterobacteria	Group I	Tunavirus	Tunavirus	Tunavirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli BL21(DE3)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tunavirus	Tunavirus IME18	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH051912	Enterobacteria phage vB_EcoS_IME167	49794	45.548	Enterobacteria	Group I	Tunavirus	Tunavirus	Tunavirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli BL21(DE3)	High-quality	High-quality	99.420	AAI-based (high-confidence)	Tunavirus	Tunavirus JMPW1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_19
MH051913	Enterobacteria phage vB_EcoM_IME281	170531	39.442	Enterobacteria	Group I	Dhakavirus	Dhakavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli BL21(DE3)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dhakavirus	Dhakavirus ime281	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH051914	Enterobacteria phage vB_EcoM_IME338	85675	38.780	Enterobacteria	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli BL21(DE3)	High-quality	High-quality	97.330	AAI-based (high-confidence)	Felixounavirus	Felixounavirus IME338	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH051915	Enterobacteria phage vB_EcoM_IME339	164366	35.640	Enterobacteria	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli BL21(DE3)	High-quality	High-quality	97.850	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecomim339	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MH051916	Enterobacteria phage vB_EcoM_IME340	165549	35.549	Enterobacteria	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli BL21(DE3)	High-quality	High-quality	98.370	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecomime340	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic