INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH051917 | Enterobacteria phage vB_EcoM_IME341 | 172379 | 39.515 | Enterobacteria | Group I | Dhakavirus | Dhakavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21(DE3) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dhakavirus | Dhakavirus ime348 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH051918 | Escherichia phage vB_EcoS_IME347 | 50048 | 49.706 | Escherichia | Group I | Badaguanvirus | Badaguanvirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21(DE3) | High-quality | High-quality | 99.980 | AAI-based (high-confidence) | Badaguanvirus | Badaguanvirus IME347 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH059632 | Dickeya phage Dagda | 40484 | 48.113 | Dickeya | Group I | Aarhusvirus | Aarhusvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Aarhusvirus | Aarhusvirus dagda | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH059633 | Xanthomonas phage Carpasina | 61939 | 52.356 | Xanthomonas | Group I | Carpasinavirus | Carpasinavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas campestris | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Carpasinavirus | Carpasinavirus carpasina | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH059634 | Dickeya phage Sucellus | 39826 | 41.902 | Dickeya | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya dadantii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH059635 | Dickeya phage Amaethon | 41436 | 39.791 | Dickeya | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya dadantii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MH059636 | Erwinia phage Cronus | 175774 | 38.378 | Erwinia | Group I | Risoevirus | Risoevirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora DSM17948 | High-quality | High-quality | 99.980 | AAI-based (high-confidence) | Risoevirus | Risoevirus cronus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_78 |
| MH059637 | Pectobacterium phage Jarilo | 40552 | 50.094 | Pectobacterium | Group I | Jarilovirus | Jarilovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium carotovorum subsp. carotovorum DSM30170 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jarilovirus | Jarilovirus jarilo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH059638 | Pectobacterium phage Nepra | 74509 | 48.701 | Pectobacterium | Group I | Cbunavirus | Cbunavirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum DSM18077 | High-quality | High-quality | 97.860 | AAI-based (high-confidence) | Cbunavirus | Cbunavirus nepra | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MH059639 | Dickeya phage Ninurta | 39699 | 50.986 | Dickeya | Group I | Ningirsuvirus | Ningirsuvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani DSM 28711 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ningirsuvirus | Ningirsuvirus ninurta | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |