INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MG969406	Salmonella phage GE_vB_B3	109375	39.196	Salmonella	Group I	Ounavirinae	Unclassified	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus mushroom	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG969407	Salmonella phage GE_vB_BS	90041	39.566	Salmonella	Group I	Ounavirinae	Unclassified	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus ST11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG969408	Salmonella phage GE_vB_HIL	45334	49.724	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG969409	Salmonella phage GE_vB_M4	44895	49.787	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (medium-confidence)	Jerseyvirus	Jerseyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG969410	Salmonella phage GE_vB_M5	44432	49.572	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG969411	Salmonella phage GE_vB_MG	172009	46.049	Salmonella	Group I	Seunavirus	Seunavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (high-confidence)	Seunavirus	Seunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MG969412	Salmonella phage GE_vB_N5	148669	39.488	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequintavirus	Tequintavirus N5	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MG969414	Salmonella phage GE_vB_NS7	55248	38.742	Salmonella	Group I	Ounavirinae	Unclassified	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	Medium-quality	Genome-fragment	62.580	AAI-based (high-confidence)	Felixounavirus	Felixounavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG969415	Salmonella phage GE_vB_TR	42436	47.658	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MG969427	Anoxybacillus phage A403	40847	36.769	Anoxybacillus	Group I	Tandoganvirus	Tandoganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Anoxybacillus caldiproteolyticus	High-quality	High-quality	91.010	AAI-based (high-confidence)	Tandoganvirus	Tandoganvirus A403	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_47;cro orf_49;immunity orf_50;integrase orf_56