INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MG387042	Salmonella phage SP-3	109306	39.022	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella sp.	High-quality	High-quality	96.740	AAI-based (high-confidence)	Tequintavirus	Tequintavirus SP3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MG407615	Salmonella phage Bp96115	41264	47.378	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Pullorum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_8;integrase orf_48;integrase orf_59
MG428990	Klebsiella phage Menlow	157281	46.422	Klebsiella	Group I	Taipeivirus	Taipeivirus	Unclassified	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	99.530	AAI-based (high-confidence)	Taipeivirus	Taipeivirus menlow	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG428991	Klebsiella phage May	159631	46.768	Klebsiella	Group I	Taipeivirus	Taipeivirus	Unclassified	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Taipeivirus	Taipeivirus may	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG428992	Salmonella phage Mutine	161502	44.303	Salmonella	Group I	Kuttervirus	Kuttervirus	Cvivirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kuttervirus	Kuttervirus mutine	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG432137	Pectobacterium phage PEAT2	48659	49.126	Pectobacterium	Group I	Peatvirus	Peatvirus	Jameshumphriesvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Peatvirus	Peatvirus peat2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MG432151	Pseudomonas phage Delta	45970	52.258	Pseudomonas	Group I	Bruynoghevirus	Bruynoghevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PA-4U	Complete	High-quality	100.000	DTR (high-confidence)	Bruynoghevirus	Bruynoghevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG450654	Synechococcus phage S-CBWM1	139069	51.623	Synechococcus	Group I	Aokuangvirus	Aokuangvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp. CBW1002	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aokuangvirus	Aokuangvirus SCBWM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG459218	Acinetobacter phage SWH-Ab-1	41567	39.416	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Friunavirus	Friunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG459987	Klebsiella phage Sugarland	111103	44.958	Klebsiella	Group I	Sugarlandvirus	Sugarlandvirus	Unclassified	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	97.470	AAI-based (high-confidence)	Sugarlandvirus	Sugarlandvirus sugarland	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic