INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG271909 | Synechococcus phage S-LBS1 | 34641 | 60.218 | Synechococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. TCC793 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_12 |
| MG280946 | Salmonella phage KFS-SE1 | 59715 | 56.711 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 92.540 | AAI-based (high-confidence) | Chivirus | Chivirus KFSSE1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_57 |
| MG298964 | Streptomyces phage Alsaber | 48803 | 65.912 | Streptomyces | Group I | Camvirus | Camvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces azureus NRRL B-2655 | High-quality | High-quality | 98.950 | AAI-based (high-confidence) | Camvirus | Camvirus alsaber | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_29;integrase orf_49 |
| MG309717 | Lactococcus phage CB14a | 29339 | 34.783 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. cremoris SMQ-404 | High-quality | High-quality | 96.750 | AAI-based (high-confidence) | Skunavirus | Skunavirus CB14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG309718 | Lactococcus phage CB14b | 29339 | 34.773 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. cremoris SMQ-404 | High-quality | High-quality | 96.750 | AAI-based (high-confidence) | Skunavirus | Skunavirus CB14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG324353 | Corynebacterium phage phi673 | 44530 | 51.087 | Corynebacterium | Group I | Ikedavirus | Ikedavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium glutamicum ATCC13032 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ikedavirus | Ikedavirus phi673 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG324354 | Corynebacterium phage phi674 | 43193 | 50.749 | Corynebacterium | Group I | Ikedavirus | Ikedavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium glutamicum ATCC13032 | High-quality | High-quality | 98.600 | AAI-based (high-confidence) | Ikedavirus | Ikedavirus phi674 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG366114 | Acinetobacter phage PBAB08 | 42312 | 38.573 | Acinetobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MG366115 | Acinetobacter phage PBAB25 | 40260 | 42.837 | Acinetobacter | Group I | Lokivirus | Lokivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lokivirus | Lokivirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG383452 | Escherichia phage FEC14 | 158639 | 44.616 | Escherichia | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus FEC14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |