INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG253647 | Lactococcus phage vB_Llc_bIBB5g1 | 30132 | 34.667 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 99.260 | AAI-based (high-confidence) | Skunavirus | Skunavirus bIBB5g1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG253648 | Lactococcus phage vB_Llc_bIBB14s | 30249 | 34.679 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 99.650 | AAI-based (high-confidence) | Skunavirus | Skunavirus bIBB5g1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG253649 | Lactococcus phage vB_Llc_bIBB24tp1 | 29736 | 34.712 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 97.970 | AAI-based (high-confidence) | Skunavirus | Skunavirus bIBB5g1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG253650 | Lactococcus phage vB_Llc_bIBB77s | 29423 | 34.864 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 96.930 | AAI-based (high-confidence) | Skunavirus | Skunavirus bibb29 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG253651 | Lactococcus phage vB_Llc_bIBBEg1 | 29659 | 34.684 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 97.720 | AAI-based (high-confidence) | Skunavirus | Skunavirus bIBB5g1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG253652 | Lactococcus phage vB_Llc_bIBBF12 | 29454 | 34.824 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 97.030 | AAI-based (high-confidence) | Skunavirus | Skunavirus bIBBF12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG253653 | Lactococcus phage vB_Llc_bIBBF13 | 29374 | 34.806 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis IL1403 | High-quality | High-quality | 96.760 | AAI-based (high-confidence) | Skunavirus | Skunavirus bIBBF12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG264739 | Enterococcus phage phiNASRA1 | 40139 | 34.742 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis ATCC 49533 | High-quality | High-quality | 98.530 | AAI-based (high-confidence) | Efquatrovirus | Efquatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG266157 | Dickeya phage PP35 | 152048 | 49.304 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani F012 | High-quality | High-quality | 96.290 | AAI-based (high-confidence) | Limestonevirus | Limestonevirus limestone | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG269973 | TM7 phage DolZOral124_53_65 | 38840 | 52.490 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | candidate division TM7 DolZOral124_TM7_55_12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |