INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG471392 | Salmonella phage BSP161 | 39688 | 48.720 | Salmonella | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhimurium | High-quality | High-quality | 99.330 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus BSP161 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG488277 | Escherichia phage EG1 | 39919 | 48.461 | Escherichia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli str. K-12 substr. MG1655 | Complete | High-quality | 100.000 | DTR (high-confidence) | Teseptimavirus | Teseptimavirus EG1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG515223 | Streptomyces phage WRightOn | 45221 | 60.313 | Streptomyces | Group I | Manuelvirus | Manuelvirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces viridochromogenes DSM40736 | Complete | High-quality | 100.000 | DTR (high-confidence) | Manuelvirus | Manuelvirus wrighton | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG518519 | Streptomyces phage Manuel | 45177 | 60.095 | Streptomyces | Group I | Manuelvirus | Manuelvirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces lividans JI 1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | Manuelvirus | Manuelvirus manuel | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG518520 | Streptomyces phage Immanuel3 | 46094 | 59.632 | Streptomyces | Group I | Immanueltrevirus | Immanueltrevirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | Complete | High-quality | 100.000 | DTR (high-confidence) | Immanueltrevirus | Immanueltrevirus immanuel3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG545917 | Vibrio phage VEN | 44603 | 43.531 | Vibrio | Group I | Trungvirus | Trungvirus | Colwellvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus V2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Trungvirus | Trungvirus VEN | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG550110 | Halorubrum pleomorphic virus 12 | 9944 | 55.310 | Halorubrum | Group II | Betapleolipovirus | Betapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Halorubrum sp. LR1-23 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MG550111 | Halorubrum pleomorphic virus 10 | 9296 | 55.669 | Halorubrum | Group II | Betapleolipovirus | Betapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Halorubrum sp. LR2-17 | High-quality | High-quality | 97.580 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MG550112 | Haloferax tailed virus 1 | 38059 | 54.077 | Haloferax | Group I | Retbasiphovirus | Retbasiphovirus | Unclassified | Haloferuviridae | Kirjokansivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haloferax sp. LR2-5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MG550113 | Halorubrum pleomorphic virus 11 | 9368 | 55.209 | Halorubrum | Group II | Betapleolipovirus | Betapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Halorubrum sp. LR2-12 | High-quality | High-quality | 98.260 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |