INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MG189906	Stenotrophomonas phage vB_SmaS_DLP_5	96542	58.369	Stenotrophomonas	Group I	Delepquintavirus	Delepquintavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Delepquintavirus	Delepquintavirus DLP5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG197810	Klebsiella phage 1611E-K2-1	47797	48.915	Klebsiella	Group I	Bimevirus	Bimevirus	Jameshumphriesvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	98.480	AAI-based (high-confidence)	Bimevirus	Bimevirus bv1611EK21	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MG197996	Escherichia phage APC_JM3.2	39761	47.338	Escherichia	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_16;integrase orf_33
MG198776	Corynebacterium phage C3PO	67383	52.305	Corynebacterium	Group I	Ceetrepovirus	Ceetrepovirus	Toshachvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Corynebacterium vitaeruminis NCIB 9291	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ceetrepovirus	Ceetrepovirus C3PO	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG198777	Corynebacterium phage Darwin	67743	52.082	Corynebacterium	Group I	Ceetrepovirus	Ceetrepovirus	Toshachvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Corynebacterium vitaeruminis NCIB 9291	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ceetrepovirus	Ceetrepovirus darwin	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG198778	Corynebacterium phage PotatoChip	66359	52.288	Corynebacterium	Group I	Ceetrepovirus	Ceetrepovirus	Toshachvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Corynebacterium vitaeruminis NCIB 9291	High-quality	High-quality	98.570	AAI-based (high-confidence)	Ceetrepovirus	Ceetrepovirus zion	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG198779	Arthrobacter phage Urla	43940	61.181	Arthrobacter	Group I	Korravirus	Korravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Korravirus	Korravirus urla	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG198780	Corynebacterium phage Zion	66392	52.298	Corynebacterium	Group I	Ceetrepovirus	Ceetrepovirus	Toshachvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Corynebacterium vitaeruminis NCIB 9291	High-quality	High-quality	98.610	AAI-based (high-confidence)	Ceetrepovirus	Ceetrepovirus zion	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG198781	Arthrobacter phage Fluke	43812	60.917	Arthrobacter	Group I	Korravirus	Korravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Korravirus	Korravirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG198782	Arthrobacter phage MeganNoll	44258	60.943	Arthrobacter	Group I	Korravirus	Korravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Korravirus	Korravirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic