INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG198783 | Gordonia phage Mahdia | 42475 | 67.249 | Gordonia | Group I | Gustavvirus | Gustavvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 97.250 | AAI-based (high-confidence) | Gustavvirus | Gustavvirus mahdia | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG198784 | Gordonia phage Gustav | 44408 | 67.855 | Gordonia | Group I | Gustavvirus | Gustavvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gustavvirus | Gustavvirus gustav | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG198785 | Mycobacterium phage Thespis | 47618 | 66.996 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.180 | AAI-based (high-confidence) | Fishburnevirus | Fishburnevirus brusacoram | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_32;antirepressor orf_35 |
| MG201401 | Escherichia phage PGT2 | 42686 | 51.649 | Escherichia | Group I | Ermolevavirus | Ermolevavirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 3-104 | Complete | High-quality | 100.000 | DTR (high-confidence) | Ermolevavirus | Ermolevavirus PGT2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG208881 | Escherichia phage St11Ph5 | 72444 | 42.643 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 4s | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gamaleyavirus | Gamaleyavirus St11ph5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG209611 | Aphanizomenon phage vB_AphaS-CL131 | 112793 | 39.682 | Aphanizomenon | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aphanizomenon flos-aquae | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_98 |
| MG210949 | Arthrobacter phage Huntingdon | 43891 | 60.650 | Arthrobacter | Group I | Korravirus | Korravirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Korravirus | Korravirus huntingdon | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG214764 | Citromicrobium phage vB_Cib_ssDNA_P1 | 4360 | 59.312 | Citromicrobium | Group II | Minimarinivirus | Minimarinivirus | Unclassified | Mazaviridae | Amoyvirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Citromicrobium sp. RCC1878 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MG214783 | Sinorhizobium phage HMSP1-Susan | 51963 | 52.512 | Sinorhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium meliloti | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MG241338 | Salmonella phage YSP2 | 50316 | 42.873 | Salmonella | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Pullorum | High-quality | High-quality | 99.720 | AAI-based (high-confidence) | Tlsvirus | Tlsvirus YSP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_60 |