INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG099945 | Mycobacterium phage Koko | 52879 | 61.342 | Mycobacterium | Group I | Gladiatorvirus | Gladiatorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gladiatorvirus | Gladiatorvirus koko | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_70 |
| MG099946 | Mycobacterium phage LouisV14 | 44145 | 66.578 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Liefievirus | Liefievirus halo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32 |
| MG099947 | Mycobacterium phage Ph8s | 52874 | 62.566 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_30;antirepressor orf_69;immunity orf_72 |
| MG099948 | Mycobacterium phage Philonius | 43886 | 66.541 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Charlievirus | Charlievirus Philonius | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_34;immunity orf_35 |
| MG099949 | Mycobacterium phage Phlorence | 50403 | 60.852 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.680 | AAI-based (high-confidence) | Benedictvirus | Benedictvirus jovo | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;immunity orf_60 |
| MG099950 | Arthrobacter phage Waltz | 58499 | 64.343 | Arthrobacter | Group I | Laroyevirus | Laroyevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 98.150 | AAI-based (high-confidence) | Laroyevirus | Laroyevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG099951 | Mycobacterium phage Wilkins | 50907 | 63.932 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.060 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_35;immunity orf_66 |
| MG099952 | Mycobacterium phage WunderPhul | 48724 | 61.536 | Mycobacterium | Group I | Gladiatorvirus | Gladiatorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 92.730 | AAI-based (high-confidence) | Gladiatorvirus | Gladiatorvirus zaka | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_31;immunity orf_70 |
| MG099953 | Mycobacterium phage Youngblood | 75896 | 62.949 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.680 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_54;immunity orf_57 |
| MG159787 | Gluconobacter phage GC1 | 16523 | 50.475 | Gluconobacter | Group I | Gammatectivirus | Gammatectivirus | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Gluconobacter cerinus | Low-quality | Genome-fragment | 26.210 | HMM-based (lower-bound) | Gammatectivirus | Gammatectivirus GC1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |