INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MF405094 | Staphylococcus phage JA1 | 147135 | 30.252 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayvirus | Kayvirus G1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF407276 | Bacillus phage vB_BveP-Goe6 | 19105 | 39.780 | Bacillus | Group I | Salasvirus | Salasvirus | Picovirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus velezensis FZB42 | High-quality | High-quality | 97.560 | AAI-based (high-confidence) | Salasvirus | Salasvirus Goe6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF415410 | Klebsiella phage KPN N137 | 59100 | 56.301 | Klebsiella | Group I | Yonseivirus | Yonseivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae YMC15/11/N137 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Yonseivirus | Yonseivirus N137 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_77 |
| MF415411 | Klebsiella phage KPN U2874 | 59087 | 56.302 | Klebsiella | Group I | Yonseivirus | Yonseivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae YMC15/09/U2874 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Yonseivirus | Yonseivirus N137 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_77 |
| MF415412 | Klebsiella phage KPN N141 | 49090 | 50.959 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae YMC16/01/N141 | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | Webervirus | Webervirus N141 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF415413 | Klebsiella phage KPN N54 | 59100 | 56.301 | Klebsiella | Group I | Yonseivirus | Yonseivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae YMC15/11/N54 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Yonseivirus | Yonseivirus N137 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_77 |
| MF417929 | Uncultured Caudovirales phage clone 2F_1 | 32618 | 39.218 | Unspecified | Group I | Bracchivirus | Bracchivirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 92.020 | AAI-based (medium-confidence) | Bracchivirus | Bracchivirus U2F1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| MF418016 | Bacillus phage vB_BceM-HSE3 | 124002 | 36.206 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MF422185 | Bacillus phage BSP10 | 153767 | 42.101 | Bacillus | Group I | Nitunavirus | Nitunavirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis ATCC 15245 | High-quality | High-quality | 97.130 | AAI-based (high-confidence) | Nitunavirus | Nitunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF428478 | Staphylococcus phage SN13 | 40462 | 35.700 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius E140 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Coventryvirus | Coventryvirus SN8 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_28;cro orf_34;cro orf_35;cro orf_36;antirepressor orf_41 |