INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF428479	Staphylococcus phage SN11	40108	35.813	Staphylococcus	Group I	Coventryvirus	Coventryvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius E140	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coventryvirus	Coventryvirus WIS42	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_26;cro orf_32;cro orf_33;cro orf_34;antirepressor orf_39
MF428480	Staphylococcus phage SN10	39779	35.805	Staphylococcus	Group I	Coventryvirus	Coventryvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius E140	High-quality	High-quality	99.840	AAI-based (high-confidence)	Coventryvirus	Coventryvirus SN8	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_26;cro orf_32;cro orf_33;cro orf_34;antirepressor orf_39
MF428481	Staphylococcus phage SN8	39803	35.791	Staphylococcus	Group I	Coventryvirus	Coventryvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius E140	High-quality	High-quality	99.910	AAI-based (high-confidence)	Coventryvirus	Coventryvirus SN8	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_26;cro orf_32;cro orf_33;cro orf_34;antirepressor orf_39
MF431252	Salmonella phage vB_SenS_PVP-SE2	42425	49.982	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enteritidis 821	High-quality	High-quality	99.060	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus PVPSE2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF431615	Lentibacter phage vB_LenP_ICBM3	40497	47.250	Lentibacter	Group I	Siovirus	Siovirus	Cobavirinae	Zobellviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lentibacter sp. SH36	Complete	High-quality	100.000	DTR (high-confidence)	Siovirus	Siovirus germanense	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF431616	Lentibacter phage vB_LenP_ICBM2	40907	47.816	Lentibacter	Group I	Veravirus	Veravirus	Cobavirinae	Zobellviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lentibacter sp. SH36	Complete	High-quality	100.000	DTR (high-confidence)	Veravirus	Veravirus septentrionalis	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF431617	Lentibacter phage vB_LenP_ICBM1	40163	47.023	Lentibacter	Group I	Siovirus	Siovirus	Cobavirinae	Zobellviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lentibacter sp. SH36	Complete	High-quality	100.000	DTR (high-confidence)	Siovirus	Siovirus germanense	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF431726	Vibrio phage vB_ValP_IME271	50345	41.444	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus IME271	Medium-quality	Genome-fragment	57.690	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MF431730	Escherichia phage chee24	120622	39.263	Escherichia	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Tequintavirus	Tequintavirus chee24	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF431731	Bacteriophage T5-like pork27	120618	39.264	Unspecified	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Tequintavirus	Tequintavirus chee24	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic