INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF377440	Mycobacterium phage Bella96	60746	66.143	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.260	AAI-based (high-confidence)	Anayavirus	Anayavirus bella96	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_41;immunity orf_43
MF377441	Arthrobacter phage Timinator	51138	60.916	Arthrobacter	Group I	Marthavirus	Marthavirus	Unclassified	Berryhillviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Marthavirus	Marthavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF377442	Arthrobacter phage Franzy	49976	63.346	Arthrobacter	Group I	Jawnskivirus	Jawnskivirus	Unclassified	Berryhillviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.430	AAI-based (high-confidence)	Jawnskivirus	Jawnskivirus brent	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF398190	Staphylococcus phage vB_SauM-fRuSau02	148464	30.223	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	Complete	High-quality	100.000	DTR (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF402939	Escherichia phage OSYSP	110901	39.162	Escherichia	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	98.120	AAI-based (high-confidence)	Tequintavirus	Tequintavirus OSYSP	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MF403005	Agrobacterium phage Atu_ph02	45423	54.829	Agrobacterium	Group I	Atuphduovirus	Atuphduovirus	Dunnvirinae	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Agrobacterium tumefaciens C58	High-quality	High-quality	100.000	AAI-based (high-confidence)	Atuphduovirus	Atuphduovirus atuph02	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF403006	Agrobacterium phage Atu_ph03	45175	54.734	Agrobacterium	Group I	Atuphduovirus	Atuphduovirus	Dunnvirinae	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Agrobacterium tumefaciens C58	High-quality	High-quality	99.450	AAI-based (high-confidence)	Atuphduovirus	Atuphduovirus atuph02	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF403007	Agrobacterium phage Atu_ph04	143349	49.440	Agrobacterium	Group I	Rollinsvirus	Rollinsvirus	Unclassified	Pootjesviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Agrobacterium tumefaciens C58	Complete	High-quality	100.000	DTR (high-confidence)	Rollinsvirus	Rollinsvirus ph04	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF403008	Agrobacterium phage Atu_ph07	490380	37.060	Agrobacterium	Group I	Polybotosvirus	Polybotosvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Agrobacterium tumefaciens C58	High-quality	High-quality	100.000	AAI-based (high-confidence)	Polybotosvirus	Polybotosvirus Atuph07	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF403009	Agrobacterium phage Atu_ph08	58966	59.672	Agrobacterium	Group I	Roslyckyvirus	Roslyckyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Agrobacterium tumefaciens C58	High-quality	High-quality	100.000	AAI-based (high-confidence)	Roslyckyvirus	Roslyckyvirus ph08	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_42