INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF361639	Flavobacterium phage FLiP	9174	34.184	Flavobacterium	Unclassified	Finnlakevirus	Finnlakevirus	Unclassified	Finnlakeviridae	Lautamovirales	Ainoaviricetes	Produgelaviricota	Abadenavirae	Varidnaviria	Flavobacterium sp. B330	Low-quality	Genome-fragment	6.500	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	lytic
MF370225	Salmonella phage ST11	82101	39.020	Salmonella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica Serovar Typhimurium strain DSM 17058	High-quality	High-quality	93.240	AAI-based (high-confidence)	Felixounavirus	Felixounavirus ST11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF370964	Pseudoalteromonas phage J2-1	120295	35.844	Pseudoalteromonas	Group I	Qingdaovirus	Qingdaovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudoalteromonas sp.	Complete	High-quality	100.000	DTR (high-confidence)	Qingdaovirus	Qingdaovirus J21	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF370965	Pseudoalteromonas phage SL25	33906	40.668	Pseudoalteromonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudoalteromonas sp.	High-quality	High-quality	97.270	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MF373840	Mycobacterium phage Fred313	50053	63.974	Mycobacterium	Group I	Veracruzvirus	Veracruzvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Veracruzvirus	Veracruzvirus heldan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29;immunity orf_65
MF373841	Mycobacterium phage Hurricane	61318	67.140	Mycobacterium	Group I	Keshuvirus	Keshuvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Keshuvirus	Keshuvirus hurricane	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_42
MF373842	Rhodococcus phage Jester	46314	58.695	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	High-quality	High-quality	98.410	AAI-based (high-confidence)	Rerduovirus	Rerduovirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;immunity orf_51
MF373843	Mycobacterium phage StevieRay	48815	66.875	Mycobacterium	Group I	Fishburnevirus	Fishburnevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.630	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus brusacoram	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_32;antirepressor orf_35
MF374379	Escherichia phage DN1	41559	53.081	Escherichia	Group I	Lambdavirus	Lambdavirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli c1a	Medium-quality	Genome-fragment	57.900	AAI-based (high-confidence)	Lambdavirus	Lambdavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_33;antirepressor orf_34
MF375456	Xanthomonas phage phi Xc10	44597	62.435	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas sp.	Complete	High-quality	100.000	DTR (high-confidence)	Pradovirus	Pradovirus Xc10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic