INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BK068098 | Porphyromonas phage phage017a_JCVISC001 | 47852 | 52.084 | Porphyromonas | Group I | Dewhirstvirus | Dewhirstvirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis JCVI SC001 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dewhirstvirus | Dewhirstvirus pging00K | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_29;integrase orf_52 |
| BK068099 | Porphyromonas phage phage018a_AFR5B1 | 47762 | 52.267 | Porphyromonas | Group I | Dewhirstvirus | Dewhirstvirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis AFR5B1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dewhirstvirus | Dewhirstvirus pging00L | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_4;integrase orf_28;integrase orf_48 |
| BK068100 | Porphyromonas phage phage019a_ATCC49417 | 48192 | 51.436 | Porphyromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Porphyromonas gingivalis ATCC 49417 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Dewhirstvirus | Dewhirstvirus pging00M | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_6 |
| BK068101 | Porphyromonas phage phage020a_SJD2 | 43493 | 50.673 | Porphyromonas | Group I | Schifferlevirus | Schifferlevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis SJD2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Schifferlevirus | Schifferlevirus pging00N | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_52 |
| BK068102 | Porphyromonas phage phage021a_SJD5 | 43474 | 50.681 | Porphyromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Porphyromonas gingivalis SJD5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Schifferlevirus | Schifferlevirus pging00N | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_52 |
| BK068103 | Porphyromonas phage phage022a_WW2931 | 44472 | 50.418 | Porphyromonas | Group I | Schifferlevirus | Schifferlevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis WW2931 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Schifferlevirus | Schifferlevirus pging00O | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_52 |
| BK068104 | Porphyromonas phage phage023a_KCOM2797 | 44903 | 50.453 | Porphyromonas | Group I | Schifferlevirus | Schifferlevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis KCOM 2797 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Schifferlevirus | Schifferlevirus pging00P | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| BK068105 | Porphyromonas phage phage024a_F0570 | 45105 | 50.090 | Porphyromonas | Group I | Schifferlevirus | Schifferlevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis F0570 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Schifferlevirus | Schifferlevirus pging00Q | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_53 |
| BK068106 | Porphyromonas phage phage025a_SJD11 | 44366 | 50.471 | Porphyromonas | Group I | Haasevirus | Haasevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis SJD11 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Haasevirus | Haasevirus pging00R | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_51 |
| BK068107 | Porphyromonas phage phage026a_KCOM2802 | 42164 | 50.334 | Porphyromonas | Group I | Excelsiorvirus | Excelsiorvirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis KCOM 2802 | High-quality | High-quality | 97.010 | AAI-based (high-confidence) | Excelsiorvirus | Excelsiorvirus pging00S | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_46;integrase orf_49 |