Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
BK068088Porphyromonas phage phage005a_ATCC494174871748.182PorphyromonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Porphyromonas gingivalis ATCC 49417High-qualityHigh-quality96.960AAI-based (high-confidence) LudisvirusLudisvirus pging00ACurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_2;antirepressor orf_43
BK068089Porphyromonas phage phage006a_EM33521953.911PorphyromonasGroup I HonmavirusHonmavirusUnclassifiedAlisviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Porphyromonas gingivalis EM3Medium-qualityGenome-fragment82.230AAI-based (high-confidence) HonmavirusHonmavirus pging00BCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
BK068090Honmavirus pging00D3457154.135UnspecifiedGroup I HonmavirusHonmavirusUnclassifiedAlisviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Porphyromonas gingivalis KCOM 2797Medium-qualityGenome-fragment80.710AAI-based (medium-confidence) HonmavirusHonmavirus pging00DCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
BK068091Porphyromonas phage phage009a_Kyudai33456954.127PorphyromonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Porphyromonas gingivalis Kyudai-3Medium-qualityGenome-fragment80.710AAI-based (medium-confidence) HonmavirusHonmavirus pging00DCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
BK068092Porphyromonas phage phage011a_WW29523519453.458PorphyromonasGroup I HonmavirusHonmavirusUnclassifiedAlisviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Porphyromonas gingivalis WW2952Medium-qualityGenome-fragment82.170AAI-based (high-confidence) HonmavirusHonmavirus pging00FCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
BK068093Porphyromonas phage phage012a_381OKJP3426553.346PorphyromonasGroup I HonmavirusHonmavirusUnclassifiedAlisviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Porphyromonas gingivalis 381OKJPMedium-qualityGenome-fragment80.000AAI-based (medium-confidence) HonmavirusHonmavirus pging00GCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
BK068094Porphyromonas phage phage013a_WW28853349053.741PorphyromonasGroup I HonmavirusHonmavirusUnclassifiedAlisviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Porphyromonas gingivalis WW2885Medium-qualityGenome-fragment78.190AAI-based (medium-confidence) HonmavirusHonmavirus pging00HCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
BK068095Porphyromonas phage phage014a_Kyudai43356553.603PorphyromonasGroup I HonmavirusHonmavirusUnclassifiedAlisviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Porphyromonas gingivalis Kyuda-4Medium-qualityGenome-fragment78.370AAI-based (medium-confidence) HonmavirusHonmavirus pging00ICurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
BK068096Porphyromonas phage phage015a_SRR9217400mag33322553.661PorphyromonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Porphyromonas gingivalis SRR9217400-mag-bin.3Medium-qualityGenome-fragment77.570AAI-based (medium-confidence) HonmavirusHonmavirus pging00ICurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
BK068097Porphyromonas phage phage016a_WW28664956351.726PorphyromonasGroup I DewhirstvirusDewhirstvirusUnclassifiedNixviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Porphyromonas gingivalis WW2866High-qualityHigh-quality100.000AAI-based (high-confidence) DewhirstvirusDewhirstvirus pging00JThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_6;integrase orf_62
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