INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BK068108 | Porphyromonas phage phage027a_F0568 | 44137 | 50.298 | Porphyromonas | Group I | Haasevirus | Haasevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis F0568 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Haasevirus | Haasevirus pging00T | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_52 |
| BK068109 | Porphyromonas phage phage028a_KCOM2799 | 46535 | 50.351 | Porphyromonas | Group I | Haasevirus | Haasevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis KCOM 2799 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Haasevirus | Haasevirus pging00U | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_62 |
| BK068110 | Porphyromonas phage phage029a_Kyudai3 | 44414 | 50.347 | Porphyromonas | Group I | Haasevirus | Haasevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis Kyudai-3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Haasevirus | Haasevirus pging00V | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_54 |
| BK068111 | Porphyromonas phage phage030a_KCOM2803 | 44695 | 50.008 | Porphyromonas | Group I | Haasevirus | Haasevirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis KCOM 2803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Haasevirus | Haasevirus pging00W | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| BK068112 | Porphyromonas phage phage031a_D83T3 | 44137 | 50.298 | Porphyromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Porphyromonas gingivalis D83T3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Haasevirus | Haasevirus pging00T | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_52 |
| BK068113 | Porphyromonas phage phage032a_KCOM2801 | 41939 | 48.954 | Porphyromonas | Group I | Nixvirus | Nixvirus | Unclassified | Nixviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Porphyromonas gingivalis KCOM 2801 | High-quality | High-quality | 97.080 | AAI-based (medium-confidence) | Nixvirus | Nixvirus pging00X | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_48;integrase orf_51 |
| BK068243 | Methanobrevibacter gottschalkii virus vir075 | 37066 | 31.741 | Methanobrevibacter | Group I | Hewusuvirus | Hewusuvirus | Unclassified | Usuviridae | Methanobavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Methanobrevibacter gottschalkii | High-quality | High-quality | 96.320 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| BTJB01000001 | Mollyvirus Mo1-1 | 620463 | 60.213 | Unspecified | Group I | Mollyvirus | Mollyvirus | Unclassified | Molycolviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.230 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_261 |
| BX571876 | Leptospira phage LE1 | 73623 | 38.527 | Leptospira | Group I | Saintgironsvirus | Saintgironsvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Saintgironsvirus | Saintgironsvirus LE1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| CAJCJZ010000002 | Enterococcus phage vB_EfaS_140 | 85454 | 30.185 | Enterococcus | Group I | Vipetofemvirus | Vipetofemvirus | Andrewesvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.270 | AAI-based (high-confidence) | Vipetofemvirus | Vipetofemvirus vv140 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |