INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY652724 | Klebsiella phage vB_KpnP_IL33 | 41335 | 52.495 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Przondovirus | Przondovirus IL33 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY652725 | Klebsiella phage vB_KpnP_BIS33 | 41697 | 52.704 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Przondovirus | Przondovirus BIS33 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY652726 | Klebsiella phage vB_KpnM_BIS47 | 147443 | 44.622 | Klebsiella | Group I | Mydovirus | Mydovirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | Mydovirus | Mydovirus BIS47 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KY653116 | Staphylococcus phage IME1318_01 | 45236 | 34.488 | Staphylococcus | Group I | Azeredovirinae | Unclassified | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus haemolyticus IME1318 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;antirepressor orf_8 |
| KY653117 | Staphylococcus phage IME1323_01 | 44282 | 34.179 | Staphylococcus | Group I | Azeredovirinae | Unclassified | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus caprae IME1323 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;antirepressor orf_11 |
| KY653118 | Morganella phage IME1369_01 | 47739 | 45.820 | Morganella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Morganella morganii IME1369 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;integrase orf_64 |
| KY653119 | Morganella phage IME1369_02 | 39387 | 50.022 | Morganella | Group I | Hendrixvirinae | Unclassified | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Morganella morganii IME1369 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_49 |
| KY653120 | Staphylococcus phage IME1348_01 | 42371 | 34.686 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis IME1348 | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | Rockefellervirus | Rockefellervirus IME134801 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7 |
| KY653123 | Staphylococcus phage IME1361_01 | 43516 | 32.850 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus IME1361 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus IME136101 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;cro orf_8;antirepressor orf_9;antirepressor orf_12;integrase orf_37 |
| KY653124 | Staphylococcus phage IME1367_01 | 43135 | 33.657 | Staphylococcus | Group I | Bronfenbrennervirinae | Unclassified | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus warneri IME1367 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;antirepressor orf_8 |