INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY653125 | Staphylococcus phage IME1346_01 | 42689 | 33.428 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus IME1346 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus pv13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_5;antirepressor orf_9;antirepressor orf_10;integrase orf_38 |
| KY653126 | Staphylococcus virus IME1354_01 | 42706 | 34.166 | Staphylococcus | Group I | Zhangqianvirus | Zhangqianvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sp. IME1354 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Zhangqianvirus | Zhangqianvirus IME1354 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_7;cro orf_8 |
| KY653127 | Corynebacterium phage IME1320_01 | 40068 | 58.004 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium simulans IME1320 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| KY653129 | Staphylococcus phage IME1365_01 | 44875 | 35.349 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus haemolyticus IME1365 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_5;antirepressor orf_7 |
| KY653237 | Salmonella phage alphaalpha | 5387 | 44.663 | Salmonella | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Salmonella typhimurium ATCC 13311 | High-quality | High-quality | 91.610 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KY654690 | Citrobacter phage Mijalis | 87998 | 38.984 | Citrobacter | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus moogle | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_38 |
| KY657202 | Salmonella phage GJL01 | 50407 | 42.843 | Salmonella | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella pullorum SP1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tlsvirus | Tlsvirus YSP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31 |
| KY658673 | Vibrio phage H2 PGK-2017 | 46149 | 43.136 | Vibrio | Group I | Strymvirus | Strymvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum A023 | Complete | High-quality | 100.000 | DTR (medium-confidence) | Strymvirus | Strymvirus H2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28 |
| KY658674 | Vibrio phage H8 | 46157 | 43.135 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum T265 | Complete | High-quality | 100.000 | DTR (medium-confidence) | Strymvirus | Strymvirus H2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28 |
| KY658675 | Vibrio phage H20 | 53224 | 43.022 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum BA35 | Complete | High-quality | 100.000 | DTR (high-confidence) | Strymvirus | Strymvirus strym | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28 |