INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY624616 | Corynebacterium phage LGCM-V9 | 36671 | 51.049 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis biovar Equi 48 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_16 |
| KY626162 | Salmonella phage Si3 | 84419 | 39.013 | Salmonella | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Infantis | High-quality | High-quality | 95.890 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus Si3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY626163 | Salmonella phage SE40 | 28914 | 50.173 | Salmonella | Group I | Guernseyvirinae | Unclassified | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | Medium-quality | Genome-fragment | 67.520 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY626176 | Marinomonas phage CPP1m | 44245 | 43.363 | Marinomonas | Group I | Murciavirus | Murciavirus | Colwellvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Marinomonas mediterranea | High-quality | High-quality | 97.490 | AAI-based (high-confidence) | Murciavirus | Murciavirus CPP1m | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY626177 | Marinomonas phage CPG1g | 44244 | 43.360 | Marinomonas | Group I | Murciavirus | Murciavirus | Colwellvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Marinomonas mediterranea | High-quality | High-quality | 97.490 | AAI-based (high-confidence) | Murciavirus | Murciavirus CPP1m | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY629563 | Sphingobium phage Lacusarx | 130138 | 60.175 | Sphingobium | Group I | Lacusarxvirus | Lacusarxvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sphingobium sp. IP1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lacusarxvirus | Lacusarxvirus lacusarx | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_80;integrase orf_103 |
| KY629621 | Streptococcus virus MS1 | 56075 | 42.261 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae R6 | High-quality | High-quality | 96.630 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KY630163 | Salmonella phage S8 | 158432 | 44.527 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella gallinarum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus BSP101 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY630187 | Serratia phage BF | 357154 | 34.423 | Serratia | Group I | Eneladusvirus | Eneladusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens UCC2017 | High-quality | High-quality | 98.910 | AAI-based (high-confidence) | Eneladusvirus | Eneladusvirus BF | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KY652723 | Klebsiella phage vB_KpnP_PRA33 | 40605 | 52.516 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Przondovirus | Przondovirus PRA33 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |