INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW145137	Providencia phage PSTNGR2lys	50958	41.624	Providencia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Providencia stuartii	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	cro orf_30
MW145138	Providencia phage Kokobel2	45880	47.520	Providencia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Providencia stuartii	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MW145139	Providencia phage Kokobel1	59837	48.916	Providencia	Group I	Kokobelvirus	Kokobelvirus	Unclassified	Casjensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Providencia stuartii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kokobelvirus	Kokobelvirus kokobel1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW145539	Streptomyces phage SscP1EGY	51751	57.914	Streptomyces	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces scabiei	High-quality	High-quality	94.230	AAI-based (high-confidence)	Bingvirus	Bingvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW147366	Staphylococcus phage B_UFSM4	41290	33.972	Staphylococcus	Group I	Peeveelvirus	Peeveelvirus	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	97.450	AAI-based (high-confidence)	Peeveelvirus	Peeveelvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_5;antirepressor orf_28;cro orf_33;integrase orf_37
MW147367	Synechococcus phage S-H9-2	187320	40.320	Synechococcus	Group I	Yushanluvirus	Yushanluvirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp. WH 8102	High-quality	High-quality	97.010	AAI-based (high-confidence)	Yushanluvirus	Yushanluvirus satich	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MW147598	Yersinia phage PYps23T	54869	43.874	Yersinia	Group I	Carltongylesvirus	Carltongylesvirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	Complete	High-quality	100.000	DTR (high-confidence)	Carltongylesvirus	Carltongylesvirus PYps23T	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW147599	Yersinia phage PYps3T	52854	43.813	Yersinia	Group I	Carltongylesvirus	Carltongylesvirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	99.890	AAI-based (high-confidence)	Carltongylesvirus	Carltongylesvirus PYps3T	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW147600	Yersinia phage PYps4T	52855	43.816	Yersinia	Group I	Cleopatravirinae	Unclassified	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	99.890	AAI-based (high-confidence)	Carltongylesvirus	Carltongylesvirus PYps3T	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW147601	Yersinia phage PYps16N	52376	44.020	Yersinia	Group I	Carltongylesvirus	Carltongylesvirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	98.870	AAI-based (high-confidence)	Carltongylesvirus	Carltongylesvirus PYps16N	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic