INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW147602	Yersinia phage PYps16T	52855	43.812	Yersinia	Group I	Cleopatravirinae	Unclassified	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	99.890	AAI-based (high-confidence)	Carltongylesvirus	Carltongylesvirus PYps3T	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW147603	Yersinia phage PYps49T	39459	48.772	Yersinia	Group I	Berlinvirus	Berlinvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	98.750	AAI-based (high-confidence)	Berlinvirus	Berlinvirus PYPS50	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW149272	Salmonella phage vB_SalS_ABTNLsp1	58922	56.324	Salmonella	Group I	Chivirus	Chivirus	Unclassified	Casjensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica CVCC 3383	High-quality	High-quality	91.530	AAI-based (high-confidence)	Chivirus	Chivirus iEPS5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW149273	Salmonella phage vB_SalS_ABTNLsp4	106178	39.115	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica CVCC 503	High-quality	High-quality	93.960	AAI-based (high-confidence)	Tequintavirus	Tequintavirus ABTNLsp4	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MW149274	Salmonella phage vB_SalM_ABTNLsp5	172418	39.670	Salmonella	Group I	Dhakavirus	Dhakavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica CVCC 79102	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dhakavirus	Dhakavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_146
MW149275	Salmonella phage vB_SalS_ABTNLsp9	109695	39.248	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica CICC 21501	High-quality	High-quality	97.030	AAI-based (high-confidence)	Tequintavirus	Tequintavirus ABTNLsp9	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MW151244	Acinetobacter phage Ab_SZ3	43070	45.621	Acinetobacter	Group I	Lokivirus	Lokivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	Complete	High-quality	100.000	DTR (high-confidence)	Lokivirus	Lokivirus IMEAB3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MW161461	Cutibacterium phage FD1	29774	54.265	Cutibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW161462	Cutibacterium phage FD2	29768	54.256	Cutibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW161463	Cutibacterium phage FD3	29638	54.187	Cutibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic