INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT968995 | Escherichia phage vB_EcoM_WL-3 | 165369 | 35.480 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.390 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT974436 | Salmonella phage ISTP3 | 156121 | 44.779 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 98.780 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT975991 | Alteromonas phage phiAFP1 | 5859 | 40.587 | Alteromonas | Group II | Anademivirus | Anademivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Alteromonas macleodii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MT980831 | Serratia phage vB_SmaS-Smarc2 | 44871 | 56.959 | Serratia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Serratia marcescens 8927 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT980832 | Serratia phage vB_SmaS-Smarc3 | 40056 | 57.103 | Serratia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Serratia marcescens 3457 | High-quality | High-quality | 95.250 | AAI-based (high-confidence) | Otakuvirus | Otakuvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT980833 | Serratia phage vB_SmaS-Smarc4 | 43034 | 55.235 | Serratia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Serratia marcescens 9667 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT980834 | Serratia phage vB_SmaS-Smarc5 | 60348 | 58.401 | Serratia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Serratia marcescens 4526 | High-quality | High-quality | 94.960 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MT980836 | Ruminococcus phage phiRg507T2_2 | 37304 | 41.878 | Ruminococcus | Group I | Ahaonvirus | Ahaonvirus | Munstervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | [Ruminococcus] gnavus ATCC 29149 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ahaonvirus | Ahaonvirus 507T22 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_26 |
| MT980837 | Ruminococcus phage phiRg507T2_3 | 36510 | 42.049 | Ruminococcus | Group I | Ahaonvirus | Ahaonvirus | Munstervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | [Ruminococcus] gnavus ATCC 29149 | High-quality | High-quality | 97.860 | AAI-based (high-confidence) | Ahaonvirus | Ahaonvirus 507T23 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT980838 | Ruminococcus phage phiRg519T2 | 36865 | 41.809 | Ruminococcus | Group I | Adovirus | Adovirus | Munstervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | [Ruminococcus] gnavus ATCC 29149 | High-quality | High-quality | 98.600 | AAI-based (high-confidence) | Adovirus | Adovirus 519T2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |