INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT952849	Mycobacterium phage Windsor	68621	66.469	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.770	AAI-based (high-confidence)	Pegunavirus	Pegunavirus Pg1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT952850	Microbacterium phage Sippinontea	17473	68.563	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Paopuvirus	Paopuvirus quaker	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT952851	Mycobacterium phage Gervas	69130	67.483	Mycobacterium	Group I	Pipefishvirus	Pipefishvirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.040	AAI-based (high-confidence)	Pipefishvirus	Pipefishvirus athena	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT952852	Streptomyces phage Beuffert	129935	47.742	Streptomyces	Group I	Annadreamyvirus	Annadreamyvirus	Loccivirinae	Stanwilliamsviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces griseus ATCC 10137	Complete	High-quality	100.000	DTR (high-confidence)	Annadreamyvirus	Annadreamyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT952853	Arthrobacter phage Orcanus	39404	66.998	Arthrobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis NRRL B-2979	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_34
MT952854	Mycobacterium phage Miniwave	74961	62.985	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.440	AAI-based (high-confidence)	Kostyavirus	Kostyavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_49;immunity orf_52
MT955612	Staphylococcus phage SPbeta-like 2	124000	30.377	Staphylococcus	Group I	Spbetavirus	Spbetavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus haemolyticus	High-quality	High-quality	97.080	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_75;integrase orf_79;integrase orf_97;integrase orf_112;integrase orf_131
MT956952	Lactobacillus phage MLC-A	41511	44.706	Lactobacillus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus sp.	High-quality	High-quality	99.300	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_19;antirepressor orf_25;antirepressor orf_29
MT966872	Klebsiella phage P510	39383	53.124	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus P510	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT966873	Klebsiella phage P560	40562	53.057	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Przondovirus	Przondovirus P560	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic