INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT980839	Atrivirus PS6	37780	41.316	Unspecified	Group I	Atrivirus	Atrivirus	Munstervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	[Ruminococcus] gnavus ATCC 29149	High-quality	High-quality	100.000	AAI-based (high-confidence)	Atrivirus	Atrivirus PS6	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT980840	Ruminococcus phage phiRgIBDN1	37233	41.485	Ruminococcus	Group I	Adovirus	Adovirus	Munstervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	[Ruminococcus] gnavus ATCC 29149	High-quality	High-quality	99.570	AAI-based (high-confidence)	Adovirus	Adovirus IBDN1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_30
MT980841	Ruminococcus phage phiRM10	36920	41.533	Ruminococcus	Group I	Aceathervirus	Aceathervirus	Munstervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	[Ruminococcus] gnavus ATCC 29149	High-quality	High-quality	98.780	AAI-based (high-confidence)	Aceathervirus	Aceathervirus RM10	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_31
MT984581	Escherichia phage T4	168908	35.290	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli B	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus T4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT986025	Gordonia phage GrootJr	67176	65.861	Gordonia	Group I	Foxborovirus	Foxborovirus	Emilbogenvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Foxborovirus	Foxborovirus NatB6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT986026	Microbacterium phage Gubbabump	41492	63.405	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus ilzat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT986027	Microbacterium phage Winzigespinne	41556	63.442	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus ilzat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT986028	Arthrobacter phage Thunderclap	59150	53.011	Arthrobacter	Group I	Amigovirus	Amigovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	Complete	High-quality	100.000	DTR (high-confidence)	Amigovirus	Amigovirus amigo	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT986029	Gordonia phage Linetti	78164	58.677	Gordonia	Group I	Montyvirus	Montyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae NRRL B-16283	Complete	High-quality	100.000	DTR (high-confidence)	Montyvirus	Montyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT989367	Phage MSP1	110675	39.763	Unspecified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unspecified	High-quality	High-quality	97.850	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic