Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MT585315Flavobacterium phage V1894907629.740FlavobacteriumGroup I FicleduovirusFicleduovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Flavobacterium columnareHigh-qualityHigh-quality100.000AAI-based (high-confidence) FicleduovirusFicleduovirus FCV1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT586120Synechococcus phage S-CAM722136241.177SynechococcusGroup I MazuvirusMazuvirusUnclassifiedKyanoviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Synechococcus sp. WH7803High-qualityHigh-quality100.000AAI-based (high-confidence) MazuvirusMazuvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_133
MT588083Jerseyvirus jersey4319349.848UnspecifiedGroup I JerseyvirusJerseyvirusGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar EnteritidisCompleteHigh-quality100.000DTR (high-confidence) JerseyvirusJerseyvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT591577Yersinia phage vB_YpM_Tongde3949251.783YersiniaGroup I MuvirusMuvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestisHigh-qualityHigh-quality100.000AAI-based (high-confidence) MuvirusMuvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT596497Staphylococcus phage 4564339334.720StaphylococcusGroup I RockefellervirusRockefellervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidis 414CompleteHigh-quality100.000DTR (high-confidence) RockefellervirusRockefellervirus CNPH82The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_16;antirepressor orf_24
MT596498Staphylococcus phage vB_SepS_BE014271834.835StaphylococcusGroup I RockefellervirusRockefellervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidis F12CompleteHigh-quality100.000DTR (high-confidence) RockefellervirusRockefellervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_6;antirepressor orf_10
MT596499Staphylococcus phage vB_SepS_BE029523329.354StaphylococcusGroup I SextaecvirusSextaecvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidis F12CompleteHigh-quality100.000DTR (high-confidence) SextaecvirusSextaecvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_14
MT596500Staphylococcus phage BESEP31827129.966StaphylococcusGroup I AndhravirusAndhravirusRakietenvirinaeRountreeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidis F12CompleteHigh-quality100.000ITR (high-confidence) AndhravirusAndhravirus besep3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT596501Staphylococcus phage vB_SepM_BE0414233127.934StaphylococcusGroup I SepunavirusSepunavirusTwortvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidis F12CompleteHigh-quality100.000DTR (high-confidence) SepunavirusSepunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_12;antirepressor orf_62
MT596502Staphylococcus phage vB_SepM_BE0514027128.044StaphylococcusGroup I SepunavirusSepunavirusTwortvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus epidermidis F12CompleteHigh-quality100.000DTR (high-confidence) SepunavirusSepunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_37
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