INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT585315 | Flavobacterium phage V189 | 49076 | 29.740 | Flavobacterium | Group I | Ficleduovirus | Ficleduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium columnare | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ficleduovirus | Ficleduovirus FCV1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT586120 | Synechococcus phage S-CAM7 | 221362 | 41.177 | Synechococcus | Group I | Mazuvirus | Mazuvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mazuvirus | Mazuvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_133 |
| MT588083 | Jerseyvirus jersey | 43193 | 49.848 | Unspecified | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | Complete | High-quality | 100.000 | DTR (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT591577 | Yersinia phage vB_YpM_Tongde | 39492 | 51.783 | Yersinia | Group I | Muvirus | Muvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Muvirus | Muvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT596497 | Staphylococcus phage 456 | 43393 | 34.720 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis 414 | Complete | High-quality | 100.000 | DTR (high-confidence) | Rockefellervirus | Rockefellervirus CNPH82 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_16;antirepressor orf_24 |
| MT596498 | Staphylococcus phage vB_SepS_BE01 | 42718 | 34.835 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis F12 | Complete | High-quality | 100.000 | DTR (high-confidence) | Rockefellervirus | Rockefellervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_6;antirepressor orf_10 |
| MT596499 | Staphylococcus phage vB_SepS_BE02 | 95233 | 29.354 | Staphylococcus | Group I | Sextaecvirus | Sextaecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis F12 | Complete | High-quality | 100.000 | DTR (high-confidence) | Sextaecvirus | Sextaecvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_14 |
| MT596500 | Staphylococcus phage BESEP3 | 18271 | 29.966 | Staphylococcus | Group I | Andhravirus | Andhravirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis F12 | Complete | High-quality | 100.000 | ITR (high-confidence) | Andhravirus | Andhravirus besep3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT596501 | Staphylococcus phage vB_SepM_BE04 | 142331 | 27.934 | Staphylococcus | Group I | Sepunavirus | Sepunavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis F12 | Complete | High-quality | 100.000 | DTR (high-confidence) | Sepunavirus | Sepunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_12;antirepressor orf_62 |
| MT596502 | Staphylococcus phage vB_SepM_BE05 | 140271 | 28.044 | Staphylococcus | Group I | Sepunavirus | Sepunavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis F12 | Complete | High-quality | 100.000 | DTR (high-confidence) | Sepunavirus | Sepunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_37 |