INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN988524 | Rhizobium phage RHph_TM3_3_6 | 206788 | 41.101 | Rhizobium | Group I | Cuauhnahuacvirus | Cuauhnahuacvirus | Unclassified | Kleczkowskaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli T3_6 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cuauhnahuacvirus | Cuauhnahuacvirus TM30 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988525 | Rhizobium phage RHph_Y65 | 206821 | 41.174 | Rhizobium | Group I | Cuauhnahuacvirus | Cuauhnahuacvirus | Unclassified | Kleczkowskaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli INC1-2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cuauhnahuacvirus | Cuauhnahuacvirus Y65 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988526 | Rhizobium phage RHph_N3_2 | 43061 | 57.927 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli N3_2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_26 |
| MN988527 | Rhizobium phage RHph_N3_19 | 68656 | 42.633 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli N3_19 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988528 | Rhizobium phage RHph_N37 | 46450 | 49.277 | Rhizobium | Group I | Cuernavacavirus | Cuernavacavirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli KIM5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cuernavacavirus | Cuernavacavirus RHphN37 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988529 | Rhizobium phage RHph_I38 | 46695 | 49.149 | Rhizobium | Group I | Cuernavacavirus | Cuernavacavirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli BRASIL5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cuernavacavirus | Cuernavacavirus RHphI38 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988530 | Rhizobium phage RHph_N17 | 54317 | 56.132 | Rhizobium | Group I | Kleczkowskavirus | Kleczkowskavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli R630 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kleczkowskavirus | Kleczkowskavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988531 | Rhizobium phage RHph_Y5A | 69421 | 57.265 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli N161 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988532 | Rhizobium phage RHph_I1_9 | 154206 | 48.494 | Rhizobium | Group I | Trinifflemingvirus | Trinifflemingvirus | Staniewskivirinae | Pootjesviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium sp. I1_9 | High-quality | High-quality | 99.490 | AAI-based (high-confidence) | Trinifflemingvirus | Trinifflemingvirus I19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988533 | Rhizobium phage RHph_N2 | 44194 | 59.094 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli N741 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_26 |