INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN988534 | Rhizobium phage RHph_N34 | 153811 | 48.957 | Rhizobium | Group I | Trinifflemingvirus | Trinifflemingvirus | Staniewskivirinae | Pootjesviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli CFN42 | High-quality | High-quality | 99.240 | AAI-based (high-confidence) | Trinifflemingvirus | Trinifflemingvirus N34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988535 | Rhizobium phage RHph_N42 | 193452 | 53.439 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli IE4771 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988536 | Rhizobium phage RHph_N65 | 48682 | 60.753 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli INC1-2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_14 |
| MN988537 | Rhizobium phage RHph_TM3_3_10 | 67842 | 56.490 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli T3_10 | High-quality | High-quality | 97.730 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988538 | Rhizobium phage RHph_Y25 | 43040 | 58.685 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli N6212 | High-quality | High-quality | 98.900 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988539 | Rhizobium phage RHph_I20 | 41785 | 60.098 | Rhizobium | Group I | Morelosvirus | Morelosvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium sp. N324 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Morelosvirus | Morelosvirus RHphI20 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27 |
| MN988540 | Rhizobium phage RHph_I42 | 193262 | 53.516 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli IE4771 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988541 | Rhizobium phage RHph_I65 | 54511 | 58.711 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli INC1-2 | High-quality | High-quality | 99.220 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988542 | Rhizobium phage RHph_I3_18 | 43069 | 58.392 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli I3_18 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_27 |
| MN988543 | Rhizobium phage RHph_N2_6 | 116666 | 59.765 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli N2_6 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_7 |