Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP554579Salmonella phage PMBT2910691038.937SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica serovar Typhimurium L2-178High-qualityHigh-quality94.620AAI-based (high-confidence) TequintavirusTequintavirus mar004NP2The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP554578Salmonella phage PMBT2711270840.068SalmonellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Salmonella enterica subsp. enterica Typhimurium L2-177High-qualityHigh-quality99.630AAI-based (high-confidence) EpseptimavirusEpseptimavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP554577Pseudomonas phage PMBT234024855.633PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas fragi L1-85High-qualityHigh-quality99.200AAI-based (high-confidence) HennigervirusHennigervirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateantirepressor orf_48
PP554576Klebsiella phage PMBT124168652.197KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella oxytoca L2-97High-qualityHigh-quality100.000AAI-based (high-confidence) PrzondovirusPrzondovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP554575Escherichia phage PMBT1613648643.607EscherichiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Escherichia coli DH5[alpha]High-qualityHigh-quality97.300AAI-based (high-confidence) VequintavirusVequintavirus nomineCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP554396Stenotrophomonas phage Stm184350458.213StenotrophomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Stenotrophomonas maltophilia 18CompleteHigh-quality100.000DTR (high-confidence) MaltophvirusMaltophvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP554395Citrobacter phage Citrof54046050.292CitrobacterGroup I BerlinvirusBerlinvirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter freundii 165CompleteHigh-quality100.000DTR (high-confidence) ApdecimavirusApdecimavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP554394Citrobacter phage Citrof417859344.727CitrobacterGroup I PseudotevenvirusPseudotevenvirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter freundii 165CompleteHigh-quality100.000DTR (high-confidence) PseudotevenvirusPseudotevenvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP554338Klebsiella phage vB_KM5a1-KLB244019446.783KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella sp. M5a1High-qualityHigh-quality100.000AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PP554337Klebsiella phage vB_KM5a1-KLB2317539841.845KlebsiellaGroup I SlopekvirusSlopekvirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella sp. M5a1High-qualityHigh-quality98.450AAI-based (high-confidence) SlopekvirusSlopekvirus eap3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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