INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP554579 | Salmonella phage PMBT29 | 106910 | 38.937 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Typhimurium L2-178 | High-quality | High-quality | 94.620 | AAI-based (high-confidence) | Tequintavirus | Tequintavirus mar004NP2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP554578 | Salmonella phage PMBT27 | 112708 | 40.068 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica Typhimurium L2-177 | High-quality | High-quality | 99.630 | AAI-based (high-confidence) | Epseptimavirus | Epseptimavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP554577 | Pseudomonas phage PMBT23 | 40248 | 55.633 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas fragi L1-85 | High-quality | High-quality | 99.200 | AAI-based (high-confidence) | Hennigervirus | Hennigervirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_48 |
| PP554576 | Klebsiella phage PMBT12 | 41686 | 52.197 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella oxytoca L2-97 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Przondovirus | Przondovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP554575 | Escherichia phage PMBT16 | 136486 | 43.607 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli DH5[alpha] | High-quality | High-quality | 97.300 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus nomine | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP554396 | Stenotrophomonas phage Stm18 | 43504 | 58.213 | Stenotrophomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia 18 | Complete | High-quality | 100.000 | DTR (high-confidence) | Maltophvirus | Maltophvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP554395 | Citrobacter phage Citrof5 | 40460 | 50.292 | Citrobacter | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii 165 | Complete | High-quality | 100.000 | DTR (high-confidence) | Apdecimavirus | Apdecimavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP554394 | Citrobacter phage Citrof4 | 178593 | 44.727 | Citrobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii 165 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pseudotevenvirus | Pseudotevenvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP554338 | Klebsiella phage vB_KM5a1-KLB24 | 40194 | 46.783 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP554337 | Klebsiella phage vB_KM5a1-KLB23 | 175398 | 41.845 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 98.450 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus eap3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |