INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP558218 | Roseobacter phage CRPss-155 | 5409 | 44.870 | Roseobacter | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Roseobacter sp. FZCC0023 | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PP558217 | Roseobacter phage CRPss-154 | 5978 | 47.641 | Roseobacter | Group II | Planktonivirus | Planktonivirus | Unclassified | Chicoviridae | Secretvirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Roseobacter sp. FZCC0023 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP558216 | Roseobacter phage CRPss-153 | 5424 | 44.690 | Roseobacter | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Roseobacter sp. FZCC0023 | High-quality | High-quality | 97.400 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PP558215 | Roseobacter phage CRPss-152 | 5422 | 44.670 | Roseobacter | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Roseobacter sp. FZCC0023 | High-quality | High-quality | 97.360 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PP558214 | Roseobacter phage CRPss-151 | 5632 | 44.070 | Roseobacter | Group II | Seavirus | Seavirus | Unclassified | Chicoviridae | Secretvirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Roseobacter sp. FZCC0023 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PP556867 | Erwinia phage VL73 | 45225 | 44.106 | Erwinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia sp. TAC1.XII.93.8 (Vries et al. 2001) | High-quality | High-quality | 99.720 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP556865 | Klebsiella phage vB_KM5a1-KLB26 | 51740 | 49.250 | Klebsiella | Group I | Drexlerviridae | Unclassified | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PP556864 | Klebsiella phage vB_KM5a1-KLB25 | 174636 | 41.841 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 98.020 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus eap3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP554657 | Staphylococcus phage mosaic phi11 | 42020 | 34.262 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus USA300-BKV | High-quality | High-quality | 97.480 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;antirepressor orf_59;integrase orf_64 |
| PP554580 | Salmonella phage PMBT35 | 51582 | 47.274 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Napoli L2-220 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic |