INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP579744 | Bacillus phage KKP_4049 | 154029 | 38.971 | Bacillus | Group I | Siophivirus | Siophivirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus licheniformis KKP_3876 | Complete | High-quality | 100.000 | DTR (high-confidence) | Siophivirus | Siophivirus SIOphi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP579743 | Bacillus phage KKP_4048 | 152106 | 39.012 | Bacillus | Group I | Siophivirus | Siophivirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus licheniformis KKP_3373 | Complete | High-quality | 100.000 | DTR (high-confidence) | Siophivirus | Siophivirus SIOphi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP579742 | Bacillus phage KKP_4047 | 152110 | 39.011 | Bacillus | Group I | Siophivirus | Siophivirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus licheniformis KKP_3373 | Complete | High-quality | 100.000 | DTR (high-confidence) | Siophivirus | Siophivirus SIOphi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP579741 | Kononvirus KKP3711 | 113711 | 37.823 | Unspecified | Group I | Kononvirus | Kononvirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter sp. KKP_3684 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kononvirus | Kononvirus KKP3711 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP573285 | Pseudomonas phage vB_PaeP_SIIA-P2 | 45276 | 52.500 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa 7-61-29 | High-quality | High-quality | 99.840 | AAI-based (high-confidence) | Bruynoghevirus | Bruynoghevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP566237 | Klebsiella phage vB_XU-P1 | 43917 | 54.072 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP566124 | Dickeya phage BIM BV-99 | 40246 | 57.039 | Dickeya | Group I | Ghunavirus | Ghunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya dadantii BIM B-921 | Complete | High-quality | 100.000 | DTR (high-confidence) | Ghunavirus | Ghunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP565371 | Klebsiella phage vB_CRKPVQ_22 | 93073 | 41.799 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae (carbapenem-resistant) | Medium-quality | Genome-fragment | 52.320 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PP558327 | Escherichia phage FCWL1 | 49336 | 45.403 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21(DE3) plysS | High-quality | High-quality | 98.510 | AAI-based (high-confidence) | Tunavirus | Tunavirus SH2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP558219 | Roseobacter phage CRPss-251 | 5828 | 44.235 | Roseobacter | Group II | Oceanivirus | Oceanivirus | Unclassified | Chicoviridae | Secretvirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Roseobacter sp. FZCC0040 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |