Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP582180Enterococcus phage vB_Efs8_KEN0414240236.011EnterococcusGroup I KochikohdavirusKochikohdavirusBrockvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisCompleteHigh-quality100.000DTR (high-confidence) KochikohdavirusKochikohdavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP582179Enterococcus phage vB_Efs6_KEN035773140.034EnterococcusGroup I SaphexavirusSaphexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis 6CompleteHigh-quality100.000DTR (high-confidence) SaphexavirusSaphexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP582178Enterococcus phage vB_Efs4_KEN023974034.801EnterococcusGroup I EfquatrovirusEfquatrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis 947CompleteHigh-quality100.000DTR (high-confidence) EfquatrovirusEfquatrovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP582177Enterococcus phage vB_Efs1_KEN011797933.144EnterococcusGroup I CopernicusvirusCopernicusvirusSarlesvirinaeRountreeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis 6High-qualityHigh-quality97.910AAI-based (high-confidence) CopernicusvirusCopernicusvirus AE417Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP582176Enterococcus phage vB_Efm10_KEN224248735.199EnterococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faeciumCompleteHigh-quality100.000DTR (high-confidence) AramisvirusAramisvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP582175Enterococcus phage vB_Efm8_KEN214223135.185EnterococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecium 80CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PP582174Enterococcus phage vB_Efm3_KEN204243434.960EnterococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faeciumCompleteHigh-quality100.000DTR (high-confidence) AramisvirusAramisvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP582173Enterococcus phage vB_Efm3_KEN184334835.162EnterococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faeciumCompleteHigh-quality100.000DTR (high-confidence) AramisvirusAramisvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP580404Vibrio phage vB_VpaM_XM14605642.507VibrioGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio parahaemolyticus 1.1997High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_36;antirepressor orf_41
PP579745Bacillus phage KKP_405015302738.996BacillusGroup I SiophivirusSiophivirusBastillevirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus licheniformis KKP_3876High-qualityHigh-quality99.700AAI-based (high-confidence) SiophivirusSiophivirus SIOphiCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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