INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP554336 | Klebsiella phage vB_KM5a1-KLB22 | 45183 | 54.540 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. M5a1 | High-quality | High-quality | 99.680 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP554188 | Thermus phage Zuza8 | 6773 | 60.047 | Thermus | Group II | Thomixvirus | Thomixvirus | Unclassified | Paulinoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Thermus thermophilus HB8 | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | lytic | |||
| PP552876 | Bacillus phage PK1 | 48150 | 43.105 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.280 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP551948 | Pseudomonas phage UNO-G1W1 | 98572 | 48.339 | Pseudomonas | Group I | Omahavirus | Omahavirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens Migula | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Omahavirus | Omahavirus UNOG1W1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP551579 | Shewanella phage MSO-5 | 54379 | 48.955 | Shewanella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Shewanella oneidensis MR-1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Yushanvirus | Yushanvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP550502 | Stenotrophomonas phage CM2 | 61670 | 57.221 | Stenotrophomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Salvavirus | Salvavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP544178 | Staphylococcus phage vB_SauS_26 | 42061 | 34.714 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 97.940 | AAI-based (high-confidence) | Phietavirus | Phietavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_6;antirepressor orf_11;antirepressor orf_15;integrase orf_39 |
| PP542034 | Klebsiella phage vB_KpnP_23 | 40987 | 52.695 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae JNKPN23 | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP541615 | Staphylococcus phage 4086-1 | 17960 | 29.154 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | Complete | High-quality | 100.000 | ITR (high-confidence) | Rosenblumvirus | Rosenblumvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP541515 | Escherichia phage PSK8 | 44592 | 45.288 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Vectrevirus | Vectrevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |