INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP695294 | Salmonella phage 1252 | 243229 | 48.523 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Enteritidis | Complete | High-quality | 100.000 | DTR (high-confidence) | Seoulvirus | Seoulvirus SPN3US | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_23 |
| PP693361 | Propionibacterium phage Philemon | 5802 | 64.374 | Propionibacterium | Group II | Bifilivirus | Bifilivirus | Unclassified | Paulinoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Propionibacterium freudenreichii | Medium-quality | Genome-fragment | 78.320 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP693301 | Yersinia phage vB_YenM_P8 | 171477 | 40.251 | Yersinia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Yersinia enterocolitica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gaprivervirus | Gaprivervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP693300 | Yersinia phage vB_YenM_P778 | 90106 | 41.827 | Yersinia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Yersinia enterocolitica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP693299 | Yersinia phage vB_YenM_P744 | 42401 | 40.034 | Yersinia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Yersinia enterocolitica | High-quality | High-quality | 95.590 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP693230 | Salmonella phage DS_BP2 | 39030 | 49.011 | Salmonella | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 97.660 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus SalMLPST153 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP681324 | Microcystis phage MaMV-DL02 | 177212 | 45.438 | Microcystis | Group I | Fukuivirus | Fukuivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis aeruginosa FACHB524 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fukuivirus | Fukuivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_9;antirepressor orf_25 |
| PP681323 | Microcystis phage MaMV-DL01 | 177213 | 45.436 | Microcystis | Group I | Fukuivirus | Fukuivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis aeruginosa FACHB524 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fukuivirus | Fukuivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_9;antirepressor orf_25 |
| PP681322 | Microcystis phage MaMV-CH02 | 172789 | 45.676 | Microcystis | Group I | Fukuivirus | Fukuivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis aeruginosa FACHB524 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fukuivirus | Fukuivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_9;integrase orf_189 |
| PP681321 | Microcystis phage MaMV-CH01 | 171437 | 45.652 | Microcystis | Group I | Fukuivirus | Fukuivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis aeruginosa FACHB524 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fukuivirus | Fukuivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_9;integrase orf_191 |