INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP712906 | Vibrio phage TCU-VP03-AIR1 | 245585 | 42.572 | Vibrio | Group I | Schizotequatrovirus | Schizotequatrovirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus VP.10806 | Complete | High-quality | 100.000 | DTR (high-confidence) | Schizotequatrovirus | Schizotequatrovirus KVP40 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP712102 | Vibrio phage VB_Vhy_SJ1 | 121361 | 43.837 | Vibrio | Group I | Pogseptimavirus | Pogseptimavirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio hyugaensis | Complete | High-quality | 100.000 | DTR (high-confidence) | Pogseptimavirus | Pogseptimavirus VspSw1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP712099 | Pseudoalteromonas phage vB_Psh_XG4 | 158231 | 30.917 | Pseudoalteromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudoalteromonas shioyasakiensis | Complete | High-quality | 100.000 | DTR (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP711298 | Mycobacterium phage MKC-IRE-02 | 55098 | 61.661 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | Complete | High-quality | 100.000 | DTR (high-confidence) | Cheoctovirus | Cheoctovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_45;integrase orf_49;cro orf_52 |
| PP706156 | Klebsiella phage LAPAZ | 51689 | 51.614 | Klebsiella | Group I | Drexlerviridae | Unclassified | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae KP01 (clinical isolate) | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP706106 | Salmonella phage SF02 | 158257 | 44.532 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica BNCC 192094 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP704628 | Pseudomonas phage YZU-PF-006 | 40307 | 56.975 | Pseudomonas | Group I | Ghunavirus | Ghunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens | High-quality | High-quality | 99.300 | AAI-based (high-confidence) | Ghunavirus | Ghunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP701474 | Vibrio phage phivp505_B | 82768 | 46.733 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus VP505 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP700703 | Erwinia phage SOI901 | 52100 | 46.560 | Erwinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia sp. TAC1.XII.93.8 (de Vries et al. 2001) | High-quality | High-quality | 97.900 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PP700702 | Erwinia phage MIF8 | 74857 | 43.249 | Erwinia | Group I | Mifoctavirus | Mifoctavirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia sp. TAC1.XII.93.8 (de Vries et al. 2001) | High-quality | High-quality | 98.350 | AAI-based (high-confidence) | Mifoctavirus | Mifoctavirus Mif8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |