INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP723050 | Klebsiella phage vB_Kpn11382-KEN22 | 166645 | 39.552 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. | High-quality | High-quality | 98.600 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP723049 | Klebsiella phage vB_Kpn529046-KEN25_1 | 169768 | 39.576 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP723048 | Klebsiella phage vB_Kpn529046-KEN25_2 | 165574 | 39.590 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. | High-quality | High-quality | 98.050 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP723047 | Klebsiella phage vB_Kpn529046-KEN37 | 166503 | 39.643 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP723046 | Klebsiella phage vB_Kpn529046-KEN39 | 166254 | 39.594 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. | High-quality | High-quality | 98.570 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus jd18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP717790 | Acinetobacter phage VB_AB_Acb75 | 45487 | 38.020 | Acinetobacter | Group I | Wenzhouvirus | Wenzhouvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii Acb75 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Wenzhouvirus | Wenzhouvirus Acb75 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP716131 | Pseudomonas phage vB_Pae_SG_Moreira_PyoP2 | 66161 | 55.400 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Pbunavirus | Pbunavirus SN | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP715504 | Pseudomonas phage vB_PaeS_HZ_ZJUX1 | 42791 | 53.691 | Pseudomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | Septimatrevirus | Septimatrevirus kakheti25 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP712941 | Vibrio phage TCU_VP01_ZB | 43338 | 49.312 | Vibrio | Group I | Maculvirus | Maculvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus VP.10806 | Complete | High-quality | 100.000 | DTR (high-confidence) | Maculvirus | Maculvirus HA5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP712940 | Pseudomonas phage JG005 | 93014 | 49.261 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 (DSM 19880) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus JG004 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_16 |