Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PV775411Klebsiella phage vB_Ka_Sem44520545.004KlebsiellaGroup I VectrevirusVectrevirusMolineuxvirinaeAutosignataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella aerogenes ATCC 13048High-qualityHigh-quality100.000AAI-based (high-confidence) VectrevirusVectrevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV775410Escherichia phage vB_Eco_Sem34513745.014EscherichiaGroup I VectrevirusVectrevirusMolineuxvirinaeAutosignataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Eschercihia coli (multidrug-resistant clinical isolate)High-qualityHigh-quality100.000AAI-based (high-confidence) VectrevirusVectrevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV768545Staphylococcus phage SA2P4561033.703StaphylococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Staphylococcus aureusHigh-qualityHigh-quality98.310AAI-based (high-confidence) TriavirusTriavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_34;cro orf_35;integrase orf_59
PV767480Rossellomorea phage phiT15279837.600RossellomoreaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Rossellomorea aquimarisMedium-qualityGenome-fragment73.150AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV765966Weissella phage WCP_013212841.089WeissellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Weissella cibaria KCKM 1129High-qualityHigh-quality96.790AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV764939Pseudomonas phage vB_PaeP_VL37347754.921PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa ATCC 27853High-qualityHigh-quality100.000AAI-based (high-confidence) LitunavirusLitunavirus Pa14Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV764938Sinorhizobium phage Phosso46947349.454SinorhizobiumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Sinohrizobium meliloti NRRL L-50High-qualityHigh-quality97.760AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV764937Agrobacterium phage Rivra4427456.516AgrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Agrobacterium tumefaciens EHA105High-qualityHigh-quality93.490AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_37
PV764747Proteus phage PA_035304638.891ProteusGroup I MyducvirusMyducvirusCleopatravirinaeChaseviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Proteus mirabilisHigh-qualityHigh-quality99.350AAI-based (high-confidence) MyducvirusMyducvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV764647Pseudomonas phage HenuyfyN199341349.425PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa 2025019NCompleteHigh-quality100.000DTR (high-confidence) PakpunavirusPakpunavirus GUMSCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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