INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV764603 | Xanthomonas phage PhiXhv-16 | 229154 | 55.087 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas hortorum pv. vitians CFBP8640 | High-quality | High-quality | 93.660 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_19;cro orf_111 |
| PV764602 | Xanthomonas phage PhiXhv-15 | 228725 | 55.174 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas hortorum pv. vitians CFBP8640 | High-quality | High-quality | 93.760 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_19;cro orf_109 |
| PV764601 | Xanthomonas phage PhiXhv-12 | 227648 | 55.114 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas hortorum pv. vitians CFBP8640 | High-quality | High-quality | 93.100 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_217;integrase orf_307 |
| PV764600 | Xanthomonas phage PhiXhv-18 | 47821 | 61.596 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas hortorum pv. vitians CFBP8643 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV764599 | Xanthomonas phage PhiXhv-7 | 46786 | 62.055 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas hortorum pv. vitians CFBP8641 | High-quality | High-quality | 99.770 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV764598 | Xanthomonas phage PhiXhv-5 | 47720 | 61.637 | Xanthomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Xanthomonas hortorum pv. vitians CFBP8639 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV763896 | Pseudomonas phage Ppr_SeaP4 | 41435 | 57.558 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas protegens Pf-5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pollyceevirus | Pollyceevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV763895 | Pseudomonas phage Ppr_SeaP3 | 41675 | 57.536 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas protegens Pf-5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pollyceevirus | Pollyceevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV763894 | Pseudomonas phage Ppr_SeaP2 | 41630 | 57.531 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas protegens Pf-5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pollyceevirus | Pollyceevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PV763893 | Pseudomonas phage Ppr_SeaP1 | 41600 | 57.692 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas protegens Pf-5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pollyceevirus | Pollyceevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |